| Protein: | ARK1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 638 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ARK1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..485] | [73..537] |
|
|
0.0 | [3..506] | [62..547] |
|
|
0.0 | [1..485] | [85..549] |
|
|
0.0 | [3..474] | [62..513] |
|
|
0.0 | [4..484] | [70..538] |
|
Region A: Residues: [1-70] |
1 11 21 31 41 51
| | | | | |
1 MNQPQIGTYN VGTQLTVGSH QVEIIKYLTS GGFAQVYSAL INPPDPHSNS SVACLKRVIV 60
61 PDKPSLNTLR
|
|
Region B: Residues: [89-110] |
1 11 21 31 41 51
| | | | | |
1 IDSHAAKAML HNGSYEVFVL ME
|
| Detection Method: |  |
| Confidence: | 221.741366 |
| Match: | 2phkA_ |
| Description: | gamma-subunit of glycogen phosphorylase kinase (Phk) |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [71-88] |
1 11 21 31 41 51
| | | | | |
1 AEVDAMRLLK NNRYVVSY
|
|
Region B: Residues: [111-335] |
1 11 21 31 41 51
| | | | | |
1 YCERGGLIDF MNTRLQNRLH EFEILQIMSQ VTQGVAAMHA LQPPLIHRDI KIENVLISAN 60
61 NEYKLCDFGS VCGIIRPPRN SQELSYVQQD ILKNTTAQYR SPEMIDTFRG LPIDEKSDIW 120
121 ALGIFLYKLC YYTTPFEKGG DLAILSGKFE FPLYPNYSEQ LKGLIRDILV QDPRHRPNVY 180
181 QLLKRISIMQ NVPCPINDIQ VVQAPSSHLN LTELHQLSAT QNILS
|
| Detection Method: | |
| Confidence: | 221.741366 |
| Match: | 2phkA_ |
| Description: | gamma-subunit of glycogen phosphorylase kinase (Phk) |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [336-414] |
1 11 21 31 41 51
| | | | | |
1 LNSPTTMENT MPNATFQISM ADNTTTAQMH PNRKPSQIAY DASFSNSAKG SQPLFDKSQN 60
61 MYHALDPPLV EPLASSVSN
|
| Detection Method: | |
| Confidence: | 12.0 |
| Match: | 1cdlA_ |
| Description: | Calmodulin |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [415-521] |
1 11 21 31 41 51
| | | | | |
1 NDNELKANSA TKLKQAIVSE AHTFRQNNSI DFPLQNIIPQ YEDSSSSSDE SYSGDVDELK 60
61 KTRSLGSYST RGNIKKNQSV KESLTSSSLP GTSFTPTSTK VNLKHEN
|
| Detection Method: | |
| Confidence: | 12.0 |
| Match: | 1cdlA_ |
| Description: | Calmodulin |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [522-638] |
1 11 21 31 41 51
| | | | | |
1 SPFKSTFVNT IDNSKDDLNK PSYEDLDVSK QNLKNSIQQR MIDKLNSSEE SFNARKMSKV 60
61 KLHEKGEIDK PTMLKSSGPI SKDKKTKPTP PPKPSHLKPK PPPKPLLLAG RKLSLDK
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.413 | a.1.1 | Globin-like |
| View | Download | 0.408 | a.100.1 | 6-phosphogluconate dehydrogenase C-terminal domain-like |
| View | Download | 0.401 | a.4.6 | C-terminal effector domain of the bipartite response regulators |
| View | Download | 0.442 | a.91.1 | Regulator of G-protein signalling, RGS |
| View | Download | 0.425 | a.24.10 | Histidine-containing phosphotransfer domain, HPT domain |
| View | Download | 0.376 | a.41.1 | Domain of poly(ADP-ribose) polymerase |
| View | Download | 0.357 | a.24.15 | FAD-dependent thiol oxidase |
| View | Download | 0.340 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.339 | f.14.1 | Voltage-gated potassium channels |
| View | Download | 0.327 | a.1.1 | Globin-like |
| View | Download | 0.322 | a.4.3 | ARID-like |
| View | Download | 0.320 | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.304 | a.118.1 | ARM repeat |
| View | Download | 0.278 | d.58.7 | RNA-binding domain, RBD |
| View | Download | 0.275 | a.1.1 | Globin-like |
| View | Download | 0.252 | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
| View | Download | 0.251 | a.26.1 | 4-helical cytokines |
| View | Download | 0.247 | d.169.1 | C-type lectin-like |
| View | Download | 0.247 | a.142.1 | PTS-regulatory domain, PRD |
| View | Download | 0.242 | a.92.1 | Carbamoyl phosphate synthetase, large subunit connection domain |
| View | Download | 0.240 | c.20.1 | Initiation factor IF2/eIF5b, domain 3 |
| View | Download | 0.240 | a.69.3 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain |
| View | Download | 0.234 | a.69.3 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain |
| View | Download | 0.229 | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.226 | a.74.1 | Cyclin-like |
| View | Download | 0.215 | g.53.1 | TAZ domain |
| View | Download | 0.212 | a.1.1 | Globin-like |
| View | Download | 0.208 | c.56.1 | HybD-like |
| View | Download | 0.205 | a.74.1 | Cyclin-like |
