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View Structure Prediction Details

Protein: RLP7
Organism: Saccharomyces cerevisiae
Length: 322 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RLP7.

Description E-value Query
Range
Subject
Range
gi|76779245 - gi|76779245|gb|AAI06057.1| RPL7 protein [Homo sapiens]
296.0 [0..6] [322..75]
gi|114620484 - gi|114620484|ref|XP_519807.2| PREDICTED: similar to ribosomal protein L7 [Pan troglodytes]
289.0 [0..8] [322..31]
gi|109086742 - gi|109086742|ref|XP_001086568.1| PREDICTED: similar to 60S ribosomal protein L7 [Macaca mulatta]
287.0 [0..7] [285..260]
gi|15293877 - gi|15293877|gb|AAK95131.1| ribosomal protein L7 [Ictalurus punctatus]
283.0 [0..55] [322..26]
gi|73999236 - gi|73999236|ref|XP_535102.2| PREDICTED: similar to 60S ribosomal protein L7 isoform 1 [Canis familia...
279.0 [0..6] [322..16]
gi|60653299 - gi|60653299|gb|AAX29344.1| ribosomal protein L7 [synthetic construct]
274.0 [0..6] [322..5]
RL7_PONAB - 60S ribosomal protein L7 OS=Pongo abelii GN=RPL7 PE=2 SV=1
RL7_PONPY - 60S ribosomal protein L7 - Pongo pygmaeus (Orangutan)
274.0 [0..7] [322..5]

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Predicted Domain #1
Region A:
Residues: [1-136]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSTQDSKAQ TLNSNPEILL RKRRNADRTR IERQELAKKK REEQIKKKRS NKNKFVRAES  60
   61 IVAKTLATSR EKERIKRVSI LEDKKAKNET QHIASGKDFI LKITEKANGA EENSVDLEET 120
  121 EEEEDDGLIR EKTTYD

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [137-322]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GKPALLFIVR VRGPLAVNIP NKAFKILSLL RLVETNTGVF VKLTKNVYPL LKVIAPYVVI  60
   61 GKPSLSSIRS LIQKRGRIIY KGENEAEPHE IVLNDNNIVE EQLGDHGIIC VEDIIHEIAT 120
  121 MGESFSVCNF FLQPFKLNRE VSGFGSLNRL RKIKQREAES RTRQFSNAAT APVIEVDIDS 180
  181 LLAKLN

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 320.156545
Match: 1k5yF_
Description: No description for 1k5yF_ was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle