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View Structure Prediction Details

Protein: JNM1
Organism: Saccharomyces cerevisiae
Length: 373 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for JNM1.

Description E-value Query
Range
Subject
Range
JNM1 - Component of the yeast dynactin complex, consisting of Nip100p, Jnm1p, and Arp1p; required for prope...
JNM1_YEAST - Nuclear migration protein JNM1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=JNM1 PE=1...
gi|190408520 - gi|190408520|gb|EDV11785.1| nuclear migration protein JNM1 [Saccharomyces cerevisiae RM11-1a]
0.0 [1..373] [1..373]

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Predicted Domain #1
Region A:
Residues: [1-373]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNVIDLSDPA INVDYDSLIG IDNEESQEIF ENEVKEDGQQ EEQEEASSRK DGLIVEPGRD  60
   61 VESLRRAIRD QLLFKIHRQN QSDCADARKL SNDEEDESRQ QKLERIREEL EELKIENLTS 120
  121 EMQTEIKELC EIQSKLATES SSRLTNLRKK LLETYEGQDT VILPNIILDT SNIKRLQKLD 180
  181 QKISLMERFV GIPEALEAEE DRKSVHSKVN ELYRSIQLLQ GDDKAEGKLQ KFRDRLVELN 240
  241 EEFENSLLGK KIQQDLRLKD DTVSKLVMPE NKVKEINSMY SMFKQYQDSL PLLAERMKSL 300
  301 NKMNNRVIEV YETTKGLDSQ ITSIQEQGKV WLKALNELDK KFDEQEVKIR ENMEQIRRKI 360
  361 DTLEDEALQR NSK

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle