YRC Public Data Repository - Protein Structure Prediction

Protein:	GOT1
Organism:	Saccharomyces cerevisiae
Length:	138 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GOT1.

Description	E-value	Query Range	Subject Range
gi\|17065530, gi\|... - gi\|7320721\|emb\|CAB81926.1\| putative protein [Arabidopsis thaliana], gi\|6561943\|emb\|CAB62447.1\| putat...	154.0	[0..3]	[135..6]
gi\|73997496 - gi\|73997496\|ref\|XP_853316.1\| PREDICTED: similar to UPF0198 protein CGI-141 [Canis familiaris]	153.0	[0..3]	[130..169]
gi\|125559024 - gi\|125559024\|gb\|EAZ04560.1\| hypothetical protein OsI_025792 [Oryza sativa (indica cultivar-group)] gi\|113611702, gi... - gi\|125600936\|gb\|EAZ40512.1\| hypothetical protein OsJ_023995 [Oryza sativa (japonica cultivar-group)]...	150.0	[0..6]	[132..223]
gi\|57118001, gi\|... - gi\|57118003\|gb\|AAW34133.1\| KISS1 isoform f [Mus musculus], gi\|57118001\|gb\|AAW34132.1\| KISS1 isoform ...	139.0	[0..3]	[110..4]
gi\|157127679, gi... - gi\|94469348\|gb\|ABF18523.1\| ferric reductase-like protein [Aedes aegypti], gi\|157127679\|ref\|XP_001655...	136.0	[0..3]	[134..4]
AGAP002357-PA - vesicle transport protein GOT1B\|protein_coding\|2R:20595480:20596072:1\|gene:AGAP002357 gi\|118782944, gi... - gi\|118782944\|ref\|XP_312602.3\| AGAP002357-PA [Anopheles gambiae str. PEST], gi\|116129807\|gb\|EAA08222....	135.0	[0..3]	[134..4]

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Predicted Domain #1

Region A:
Residues: [1-138]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWLTEAQKFG VAFTFGGFLF FLFGIFTFFD RALLALGNIL FLIGVFLIIG SQKTYIFFTR  60
   61 PNKRRGSLFF LVGAFLILLK WTFLGFIIES LGIIGLFGDF FGVIVQFLRS MPIIGPILSH 120
  121 PAIAPIVDKL AGVRVLPV

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	62.823909
Match:	PF04178.3
Description:	No description for PF04178.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.971	N/A	N/A	a.24.9	alpha-catenin/vinculin

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits