YRC Public Data Repository - Protein Structure Prediction

Protein:	ABZ2
Organism:	Saccharomyces cerevisiae
Length:	374 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ABZ2.

Description	E-value	Query Range	Subject Range
gi\|151945997 - gi\|151945997\|gb\|EDN64229.1\| 4-amino-4-deoxychorismate lyase [Saccharomyces cerevisiae YJM789] PABC_YEAST - Aminodeoxychorismate lyase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ABZ2 PE=1 SV=... ABZ2 - Aminodeoxychorismate lyase (4-amino-4-deoxychorismate lyase), catalyzes the third step in para-amino...	0.0	[1..374]	[1..374]
BCAT5_ARATH - Branched-chain-amino-acid aminotransferase 5, chloroplastic OS=Arabidopsis thaliana GN=BCAT5 PE=1 SV...	1.0E-88	[41..368]	[30..368]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	3.0E-63	[67..368]	[1083..1404]
gi\|6319165 - gi\|6319165\|gb\|AAF07191.1\|AF193845_1 branched-chain amino acid aminotransferase [Solanum tuberosum]	2.0E-62	[73..368]	[68..371]
gi\|74210653, gi\|... - gi\|74210653\|dbj\|BAE23671.1\| unnamed protein product [Mus musculus], gi\|12851429\|dbj\|BAB29038.1\| unna...	1.0E-61	[139..368]	[87..352]

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Predicted Domain #1

Region A:
Residues: [1-215]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLMDNWKTD MESYDEGGLV ANPNFEVLAT FRYDPGFARQ SASKKEIFET PDPRLGLRDE  60
   61 DIRQQIINED YSSYLRVREV NSGGDLLENI QHPDAWKHDC KTIVCQRVED MLQVIYERFF 120
  121 LLDEQYQRIR IALSYFKIDF STSLNDLLKL LVENLINCKE GNSEYHEKIQ KMINERQCYK 180
  181 MRVLVSKTGD IRIEAIPMPM EPILKLTTDY DSVST

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	54.045757
Match:	1i1kA_
Description:	Branched-chain aminoacid aminotransferase
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [216-374]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YFIKTMLNGF LIDSTINWDV VVSSEPLNAS AFTSFKTTSR DHYARARVRM QTAINNLRGS  60
   61 EPTSSVSQCE ILFSNKSGLL MEGSITNVAV IQKDPNGSKK YVTPRLATGC LCGTMRHYLL 120
  121 RLGLIEEGDI DIGSLTVGNE VLLFNGVMGC IKGTVKTKY

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	54.045757
Match:	1i1kA_
Description:	Branched-chain aminoacid aminotransferase
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits