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View Structure Prediction Details

Protein: RRN9
Organism: Saccharomyces cerevisiae
Length: 365 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RRN9.

Description E-value Query
Range
Subject
Range
RRN9_YEAST - RNA polymerase I-specific transcription initiation factor RRN9 OS=Saccharomyces cerevisiae (strain A...
RRN9 - Protein involved in promoting high level transcription of rDNA, subunit of UAF (upstream activation ...
gi|207342092 - gi|207342092|gb|EDZ69963.1| YMR270Cp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|190408495 - gi|190408495|gb|EDV11760.1| upstream activation factor subunit [Saccharomyces cerevisiae RM11-1a]
0.0 [1..365] [1..365]

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Predicted Domain #1
Region A:
Residues: [1-365]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDLDEESQI ETQIDAPIED IIRGSELTTT TADKETLKSA NELLDSLEHS HRVDLSLHLY  60
   61 SAYLLKRLLY KANEKKHFYE VNQFVKTQIK DNWTSWPNPN TIIDPSVDKL YEDIPEGIAN 120
  121 VSVQPGEISN RALMHASDMM RVELDAQWQK FLSKSALDHD VTLDVDELNI PNEISRNILV 180
  181 KLDSLFEGLH DKIAKENEFD VRQDKHSNNI RANQIDDEPM QANRRIKYTY HDLVSRGCEM 240
  241 NEDMTDIYMK SLELYNDIPE KYKKRKFRLP KQILKKYHQP KKTSSYLKEL LSKTREDFIP 300
  301 VEKLLKDKRL TSKDKSKLQR LNREETEDAL NKRTFFQVKG YLEDENEISD YELDDCLIEL 360
  361 PNGNI

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle