YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: YMR265C
Organism: Saccharomyces cerevisiae
Length: 461 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YMR265C.

Description E-value Query
Range
Subject
Range
YMR265C - Putative protein of unknown function
gi|190408490 - gi|190408490|gb|EDV11755.1| conserved hypothetical protein [Saccharomyces cerevisiae RM11-1a]
YM8F_YEAST - Uncharacterized protein YMR265C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YMR265C ...
0.0 [1..461] [1..461]
SPBC4.02c - conserved fungal protein
gi|19112267 - gi|19112267|ref|NP_595475.1| hypothetical protein SPBC4.02c [Schizosaccharomyces pombe 972h-]
6.0E-92 [42..258] [23..257]

Back

Predicted Domain #1
Region A:
Residues: [1-258]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEEFEEFRRK GEMSSRCGNH RVLRKWNSCA CELAVPFEVP EHAITKLHIY DFDNTLFATP  60
   61 GPTEQLYTRE LLNLLTSSTL PNGGWWNEPG FLQAAIEISK TKPRRYSWNA DIVKLAEESY 120
  121 SAKDTISIVL TGREESKFHK LIEHALQTAR SHWKCSENEF RFNAVCLKKR AISEYTSKYK 180
  181 KELMRDFLEY YPSLRELSIY DDRIHQIDAF KSFFHSLDLP RLKWSAIPVR PFTKSLPREQ 240
  241 ELEMVMDMVR KNNSQALS

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [259-461]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TSQKFDLRRT PRQIGYILCT ASHRLLSIEV IKYLKRRKGR RTFRPKLYEH PLYIPCAEPG  60
   61 KDIPALEIAK VWSNNDTRTF DSEKKVQHIS QIFYLEQPGK CIVHFQVTDL AVIASAHHNR 120
  121 RKPLEVYFKA TPEPNRYTFT LFPEYIVTGH FYKRDRIEDL EVVTERLINC KEDIHWVPLD 180
  181 NTIPIKAFFG RFAKLAAIPC SNA

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle