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View Structure Prediction Details

Protein: CUE1
Organism: Saccharomyces cerevisiae
Length: 203 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CUE1.

Description E-value Query
Range
Subject
Range
gi|190408489 - gi|190408489|gb|EDV11754.1| Ubc7p binding and recruitment protein [Saccharomyces cerevisiae RM11-1a]
CUE1 - Endoplasmic reticulum membrane protein that recruits the ubiquitin-conjugating enzyme Ubc7p to the E...
CUE1_YEAST - Coupling of ubiquitin conjugation to ER degradation protein 1 OS=Saccharomyces cerevisiae (strain AT...
0.0 [1..203] [1..203]
SPCC4G3.13c - CUE domain protein Cue1 /4 family
CUE4_SCHPO - CUE domain-containing protein 4, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843...
0.007 [47..131] [30..116]

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Predicted Domain #1
Region A:
Residues: [1-109]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEDSRLLITL ILVFGVIFLK KFFQSNQHPS AQRLSATGVN AHGRPQGSTQ NALRRTGRVN  60
   61 GGHPVTTQMV ETVQNLAPNL HPEQIRYSLE NTGSVEETVE RYLRGDEFS

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 12.744727
Match: PF02845
Description: CUE domain

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [110-203]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FPPGFEPSRA PMGANAAVDN NAAGGGEFND PRKKNMICAE NLLDKFHVDL NEDMSNLSFK  60
   61 DLDIEERKRL LVWQARKNLE TKLQSDKDLQ SLLT

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle