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View Structure Prediction Details

Protein: SAP30
Organism: Saccharomyces cerevisiae
Length: 201 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SAP30.

Description E-value Query
Range
Subject
Range
SAP30_YEAST - Transcriptional regulatory protein SAP30 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN...
gi|190408488 - gi|190408488|gb|EDV11753.1| hypothetical protein SCRG_02158 [Saccharomyces cerevisiae RM11-1a]
SAP30 - Subunit of a histone deacetylase complex, along with Rpd3p and Sin3p, that is involved in silencing ...
gi|207342097 - gi|207342097|gb|EDZ69966.1| YMR263Wp-like protein [Saccharomyces cerevisiae AWRI1631]
3.0E-78 [1..201] [1..201]

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Predicted Domain #1
Region A:
Residues: [1-201]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARPVNTNAE TESRGRPTQG GGYASNNNGS CNNNNGSNNN NNNNNNNNNN SNNSNNNNGP  60
   61 TSSGRTNGKQ RLTAAQQQYI KNLIETHITD NHPDLRPKSH PMDFEEYTDA FLRRYKDHFQ 120
  121 LDVPDNLTLQ GYLLGSKLGA KTYSYKRNTQ GQHDKRIHKR DLANVVRRHF DEHSIKETDC 180
  181 IPQFIYKVKN QKKKFKMEFR G

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Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle