YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: YMR258C
Organism: Saccharomyces cerevisiae
Length: 553 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YMR258C.

Description E-value Query
Range
Subject
Range
YMR258C - Protein of unknown function with similarity to F-box proteins; physically interacts with Skp1p; gree...
ROY1_YEAST - Non-SCF-type F-box protein ROY1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ROY1 PE=...
0.0 [1..553] [1..553]

Back

Predicted Domain #1
Region A:
Residues: [1-553]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAFQDQDIFI VFSHASLFLN QNDLLSLSLT SKKMHDMIAI PRLYSNIHIT KNPVLRTNKW  60
   61 FLDGGKTYVS GYRSVLKTGD KNDIFLYDRI ERLLETSHLK CIKQLTIDED LFHNREEGLQ 120
  121 LLQRLVNEIT DLDVIESLDI KDPTLFELCS AKYYRLSSLK KRVVYGETGF DGIKLWQNFK 180
  181 SLKWQLPESL DLQNVIIPEV GVMLMKQLNG GELEIKDEAY SSLRVFEYFD SLNLRFKNLR 240
  241 RLKLNHVHKQ GDGSATSMRL SSRAFKDVVN LSNLKALELE FSCEVDDCEC DDDFLQDITG 300
  301 NLVSLTSLGF IEKTFTKKGY HYMDEKWDLV VNKFILNLPN VSKDLRLLSI RHDPPLNGKG 360
  361 IDTVDGNLLR RKKLYEKVLP KLTSLETIIA PTVLQSITSY EMYACDLLWN GCKCAFCSKY 420
  421 LPLFDKYIMN HQYFSTPDAR YLDIIPIVFA AYTGKSLAKR FDPQKNWDLD LLQYAPEDTT 480
  481 WNFHGFERIH HFASYECYFD ESSFEPLATI ISHFFYPYMN YLIKILPNLR QTMLSGIYFS 540
  541 VSPELHTYET IYD

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle