YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: PET111
Organism: Saccharomyces cerevisiae
Length: 800 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PET111.

Description E-value Query
Range
Subject
Range
gi|3047310 - gi|3047310|gb|AAC13687.1| COX2 mRNA-specific translational activator [Saccharomyces bayanus]
0.0 [1..797] [1..797]
PT111_YEAST - Protein PET111, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PET111 PE=...
PET111 - Mitochondrial translational activator specific for the COX2 mRNA; located in the mitochondrial inner...
0.0 [1..800] [1..800]
gi|2935405 - gi|2935405|gb|AAC05113.1| COX2 mRNA-specific translational activator Pet111p [Saccharomyces kluyveri...
0.0 [14..797] [11..786]
gi|50303931, gi|... - gi|50303931|ref|XP_451913.1| unnamed protein product [Kluyveromyces lactis], gi|49641045|emb|CAH0230...
gi|4760392, gi|4... - gi|49641045|emb|CAH02306.1| KLLA0B08657p [Kluyveromyces lactis], gi|4760392|gb|AAD29121.1|AF120714_1...
0.0 [30..797] [33..784]
gi|4973442 - gi|4973442|gb|AAD35094.1|AF151694_1 COX2 mRNA-specific translational activator [Saccharomyces servaz...
5.0E-67 [555..777] [5..226]

Back

Predicted Domain #1
Region A:
Residues: [1-511]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLQRRFISSS GIKRLLHRES NKVMHTVFFK VRYYSTELIK KKHKEDIEDW VKAQLKDSST  60
   61 ISGVYESRNK LDWMDSITKS PSSLDILKNQ YNIVKDKDFG ILWKQKFESA DPDILMTIIS 120
  121 LSTNQKVLFS IQQLLILINS LHFLKRDYDI GQIYTTYEQF TPLLASHTDK GTYGQFIEIM 180
  181 LVVQHNLHHF DVCETLFAEY IKYCKVKPQM ISLGLNSFIR SNNTQLAVEF YTQAITNPDT 240
  241 FPITEKQLFE FLRCMERYLD MSSMKHIFYL WLKVKCGDEQ SSSTNLPSFK TLAIIHRMLL 300
  301 RFSNTDELND FLTNPVVLST GYTSSVQFEL IEFCHSLYCI KGDRTKSIDD SILMERVDKF 360
  361 ITRLNNNIST RKELYMSVVQ AYVSTNNFEN LKVILEKIQR DNDISIDGSF HLCISRYFVN 420
  421 TNQFEGLFKY YRSVVKTTDG KTRLRPAFIQ QLWSCAVNVY PMLAKEITND LLVTLKRSQY 480
  481 SKCLTWVYTF LQENAHIHTR KINGGEDSSL S

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [512-800]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GFNAVDFERF EEFKKKVSHN DVYGAELVIS NSLKEGIAPQ FSFLYSVLAL CLRNSLTGLA  60
   61 RVVDVILRTR FRYIPLKVDI LWLKWEIISN YRSFEKLSAE HLKELEFKLK EFERVHQKEL 120
  121 SVQNYLQLTQ ICFHTRDFKY ACYLISQARK NLDTSNNKQW MMYYMTSLKL ASRMHESERF 180
  181 SRILKDWNCN HRASLITPGC IRQIKGFMKY FEKRPAYIST AASIDNKEIK DRIDELVLRY 240
  241 VDYKYQGLEN MRKLTLFLKE WFDEEISLLK LEQNERKMKL FEENKKEEE

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle