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View Structure Prediction Details

Protein: YMR253C
Organism: Saccharomyces cerevisiae
Length: 414 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YMR253C.

Description E-value Query
Range
Subject
Range
gi|151945961 - gi|151945961|gb|EDN64193.1| conserved protein [Saccharomyces cerevisiae YJM789]
YM87_YEAST - Uncharacterized membrane protein YMR253C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN...
YMR253C - Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to th...
2.0E-72 [1..414] [1..414]
WTR13_ARATH - WAT1-related protein At2g37460 OS=Arabidopsis thaliana GN=At2g37460 PE=2 SV=1
6.0E-52 [62..401] [7..345]
gi|2598575 - gi|2598575|emb|CAA75575.1| MtN21 [Medicago truncatula]
7.0E-48 [66..397] [14..350]
gi|14090211, gi|... - gi|34895316|ref|NP_909001.1| putative nodulin-like protein 5NG4 [Oryza sativa (japonica cultivar-gro...
7.0E-47 [64..387] [11..333]

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Predicted Domain #1
Region A:
Residues: [1-53]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNPSVPKVMK RENNTHLLVS KEMNDTSLQL PSTTRSLSPK ESNSNEDFNV DGN

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [54-229]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ETTLQRISKD YLKPNIGLVL LTVSYFFNSA MVVSTKVLEN DPDDIANDRQ IKPLQILLVR  60
   61 MVITYIGTLI YMYINKSTIS DVPFGKPEVR KWLVLRGCTG FFGVFGMYYS LMYLTISDAV 120
  121 LITFLAPSLT IFLSWVILRE RFTKVEALGS LISLLGVVLI VRPSFLFGTP ELTDSS

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 14.327902
Match: PF00892
Description: Integral membrane protein DUF6

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [230-414]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SQIVESSDPK SRLIATLVGL WGVLGMSCVY IIIRYIGKRA HAIMSVSYFS LITAIVSFIG  60
   61 INTIPSMKFQ IPHSKKQWIL FGNLGVSGFI FQLLLTMGIQ RERAGRGSLM TYTQLLYAVF 120
  121 WDVALYKHWP NIWSWIGMII IISATLWVIR IRAANNETTA KDLTPIIDDE ENSIPLTEFD 180
  181 LSDSK

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 11.004365
Match: PF00892
Description: Integral membrane protein DUF6

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle