YRC Public Data Repository - Protein Structure Prediction

Protein:	FAA4
Organism:	Saccharomyces cerevisiae
Length:	694 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FAA4.

Description	E-value	Query Range	Subject Range
FAA4 - Long chain fatty acyl-CoA synthetase, activates imported fatty acids with a preference for C12:0-C16... LCF4_YEAST - Long-chain-fatty-acid--CoA ligase 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=FAA4...	0.0	[1..694]	[1..694]
ACSA2_PSEAE, ACS... - Acetyl-coenzyme A synthetase 2 OS=Pseudomonas aeruginosa GN=acsA2 PE=3 SV=1, (Q9HV66) Acetyl-coenzym... ACSA2_PSEAE - Acetyl-coenzyme A synthetase 2 OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / ...	0.0	[1..689]	[1..623]
gi\|17986522, gi\|... - gi\|17986522\|ref\|NP_539156.1\| acetyl-coenzyme A synthetase [Brucella melitensis 16M], gi\|17982126\|gb\|... gi\|25293392 - gi\|25293392\|pir\|\|AI3281 acetate-CoA ligase (EC 6.2.1.1) [imported] - Brucella melitensis (strain 16M...	0.0	[1..689]	[20..647]
ACSA_RHILO - Acetyl-coenzyme A synthetase OS=Rhizobium loti GN=acsA PE=3 SV=1 ACSA_RHILO - Acetyl-coenzyme A synthetase OS=Rhizobium loti (strain MAFF303099) GN=acsA PE=3 SV=1	0.0	[1..689]	[1..627]
ACSA_SYNY3 - Acetyl-coenzyme A synthetase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=acsA PE=3 SV=1 ACSA_SYNY3 - Acetyl-coenzyme A synthetase OS=Synechocystis sp. (strain ATCC 27184 / PCC 6803 / N-1) GN=acsA PE=3 ... gi\|7437824 - pir\|\|S75763 acetate-CoA ligase (EC 6.2.1.1) - Synechocystis sp. (strain PCC 6803)	0.0	[2..685]	[19..632]
gi\|25293385, gi\|... - gi\|25293385\|pir\|\|AH2913 acetyl-coenzyme A synthetase acs [imported] - Agrobacterium tumefaciens (str... gi\|15889994, gi\|... - gi\|17936620\|ref\|NP_533410.1\| acetyl-coenzyme A synthetase [Agrobacterium tumefaciens str. C58], gi\|1...	0.0	[1..689]	[7..632]
ACSL6 - acyl-CoA synthetase long-chain family member 6	0.0	[15..691]	[65..694]
ACSL1_MOUSE - Long-chain-fatty-acid--CoA ligase 1 OS=Mus musculus GN=Acsl1 PE=1 SV=2	0.0	[5..691]	[60..695]

Back

Predicted Domain #1

Region A:
Residues: [1-63]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTEQYSVAVG EAANEHETAP RRNIRVKDQP LIRPINSSAS TLYEFALECF TKGGKRDGMA  60
   61 WRD

[Run NCBI BLAST on this sequence.]

Region B:
Residues: [88-100]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TWLYYELTPY ITM

[Run NCBI BLAST on this sequence.]

Region C:
Residues: [267-550]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IMYTSGSTGT PKGVVLTHYN IVAGIGGVGH NVIGWIGPTD RIIAFLPLAH IFELTFEFEA  60
   61 FYWNGILGYA NVKTLTPTST RNCQGDLMEF KPTVMVGVAA VWETVRKGIL AKINELPGWS 120
  121 QTLFWTVYAL KERNIPCSGL LSGLIFKRIR EATGGNLRFI LNGGSAISID AQKFLSNLLC 180
  181 PMLIGYGLTE GVANACVLEP EHFDYGIAGD LVGTITAKLV DVEDLGYFAK NNQGELLFKG 240
  241 APICSEYYKN PEETAAAFTD DGWFRTGDIA EWTPKGQVKI IDRK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	274.9794
Match:	1ba3__
Description:	Luciferase
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [64-87]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IIDIHETKKT IVKRVDGKDK PIEK

[Run NCBI BLAST on this sequence.]

Region B:
Residues: [101-266]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TYEEMICVMH DIGRGLIKIG VKPNGENKFH IFASTSHKWM KTFLGCMSQG IPVVTAYDTL  60
   61 GESGLIHSMV ETDSVAIFTD NQLLSKLAVP LKTAKNVKFV IHNEPIDPSD KRQNGKLYKA 120
  121 AKDAVDKIKE VRPDIKIYSF DEIIEIGKKA KDEVELHFPK PEDPAC

[Run NCBI BLAST on this sequence.]

Region C:
Residues: [551-694]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KNLVKTLNGE YIALEKLESI YRSNPYVQNI CVYADENKVK PVGIVVPNLG HLSKLAIELG  60
   61 IMVPGEDVES YIHEKKLQDA VCKDMLSTAK SQGLNGIELL CGIVFFEEEW TPENGLVTSA 120
  121 QKLKRRDILA AVKPDVERVY KENT

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	274.9794
Match:	1ba3__
Description:	Luciferase
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits