YRC Public Data Repository - Protein Structure Prediction

Protein:	RPL20A
Organism:	Saccharomyces cerevisiae
Length:	180 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RPL20A.

Description	E-value	Query Range	Subject Range
ENSCJAT00000027218 - null RL18A_BOVIN - 60S ribosomal protein L18a OS=Bos taurus GN=RPL18A PE=2 SV=1 gi\|90081908 - gi\|90081908\|dbj\|BAE90235.1\| unnamed protein product [Macaca fascicularis] RPL18A - ribosomal protein L18a	2.0E-79	[10..180]	[5..176]
RL18A_ICTPU - 60S ribosomal protein L18a OS=Ictalurus punctatus GN=rpl18a PE=2 SV=1	6.0E-75	[10..180]	[5..176]
RL18A_SALSA - 60S ribosomal protein L18a OS=Salmo salar GN=rpl18a PE=2 SV=1	7.0E-74	[10..180]	[5..176]
RL18A_SPOFR - 60S ribosomal protein L18a OS=Spodoptera frugiperda GN=RpL18A PE=2 SV=1	3.0E-67	[10..180]	[5..176]
gi\|151945394 - gi\|151945394\|gb\|EDN63637.1\| ribosomal protein L20B [Saccharomyces cerevisiae YJM789] gi\|190407612 - gi\|190407612\|gb\|EDV10879.1\| ribosomal protein L20B [Saccharomyces cerevisiae RM11-1a] RPL20B - Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl20Ap and has similari...	6.0E-67	[7..180]	[1..174]
gi\|220948266, gi... - gi\|220957442\|gb\|ACL91264.1\| RpL18A-PA [synthetic construct], gi\|220948266\|gb\|ACL86676.1\| CG6510-PA [... gi\|194880758, gi... - gi\|194880758\|ref\|XP_001974529.1\| GG21044 [Drosophila erecta], gi\|190657716\|gb\|EDV54929.1\| GG21044 [D... gi\|194126271, gi... - gi\|195335277\|ref\|XP_002034301.1\| GM19972 [Drosophila sechellia], gi\|194126271\|gb\|EDW48314.1\| GM19972... gi\|194178172, gi... - gi\|195487860\|ref\|XP_002092071.1\| RpL18A [Drosophila yakuba], gi\|194178172\|gb\|EDW91783.1\| RpL18A [Dro... gi\|195584260, gi... - gi\|195584260\|ref\|XP_002081932.1\| GD25466 [Drosophila simulans], gi\|194193941\|gb\|EDX07517.1\| GD25466 ... RpL18A-PA - The gene Ribosomal protein L18A is referred to in FlyBase by the symbol Dmel\RpL18A (CG6510, FBgn001...	2.0E-66	[10..180]	[5..176]
rpl-20 - ribosomal protein status:Confirmed UniProt:O44480 protein_id:AAB92041.2	2.0E-65	[11..180]	[9..179]
gi\|12324168, gi\|... - pir\|\|E86423 probable 60S ribosomal protein L18A - Arabidopsis thaliana, gi\|12324168\|gb\|AAG52055.1\|A...	3.0E-64	[12..179]	[137..320]
gi\|3355660 - gi\|3355660\|emb\|CAA08791.1\| ribosomal protein L18a [Podocoryne carnea]	9.0E-63	[9..179]	[2..173]

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Predicted Domain #1

Region A:
Residues: [1-180]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKILVILSVA HFKEYQVIGR RLPTESVPEP KLFRMRIFAS NEVIAKSRYW YFLQKLHKVK  60
   61 KASGEIVSIN QINEAHPTKV KNFGVWVRYD SRSGTHNMYK EIRDVSRVAA VETLYQDMAA 120
  121 RHRARFRSIH ILKVAEIEKT ADVKRQYVKQ FLTKDLKFPL PHRVQKSTKT FSYKRPSTFY 180
  181

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	132.958607
Match:	PF01775
Description:	Ribosomal L18ae protein family

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits