YRC Public Data Repository - Protein Structure Prediction

Protein:	TMA29
Organism:	Saccharomyces cerevisiae
Length:	267 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TMA29.

Description	E-value	Query Range	Subject Range
FABG_THEMA - 3-oxoacyl-[acyl-carrier-protein] reductase FabG OS=Thermotoga maritima GN=fabG PE=3 SV=1 FABG_THEMA - 3-oxoacyl-[acyl-carrier-protein] reductase FabG OS=Thermotoga maritima (strain ATCC 43589 / MSB8 / D...	2.0E-91	[10..258]	[2..244]
gi\|25283158 - pir\|\|C83961 3-oxoacyl-(acyl-carrier protein) reductase fabG [imported] - Bacillus halodurans (strain... gi\|10175111, gi\|... - gi\|15615054\|ref\|NP_243357.1\| 3-oxoacyl-(acyl-carrier protein) reductase [Bacillus halodurans C-125],...	4.0E-90	[11..260]	[2..246]
gi\|18310052, gi\|... - gi\|18310052\|ref\|NP_561986.1\| 3-ketoacyl-(acyl-carrier-protein) reductase [Clostridium perfringens st...	1.0E-87	[11..260]	[2..246]
gi\|1502421 - gi\|1502421\|gb\|AAC44307.1\| 3-ketoacyl-acyl carrier protein reductase gi\|1502421\|gb\|AA... - 3-ketoacyl-acyl carrier protein reductase	2.0E-87	[11..260]	[2..246]
gi\|221313791 - gi\|221313791\|ref\|ZP_03595596.1\| beta-ketoacyl-acyl carrier protein reductase [Bacillus subtilis subs... gi\|221318715 - gi\|221318715\|ref\|ZP_03600009.1\| beta-ketoacyl-acyl carrier protein reductase [Bacillus subtilis subs... gi\|221322986 - gi\|221322986\|ref\|ZP_03604280.1\| beta-ketoacyl-acyl carrier protein reductase [Bacillus subtilis subs... FABG_BACSU - 3-oxoacyl-[acyl-carrier-protein] reductase FabG OS=Bacillus subtilis GN=fabG PE=3 SV=3 FABG_BACSU - 3-oxoacyl-[acyl-carrier-protein] reductase FabG OS=Bacillus subtilis (strain 168) GN=fabG PE=3 SV=3	4.0E-87	[11..260]	[2..246]
FABG_AQUAE - 3-oxoacyl-[acyl-carrier-protein] reductase FabG OS=Aquifex aeolicus (strain VF5) GN=fabG PE=1 SV=1 FABG_AQUAE - 3-oxoacyl-[acyl-carrier-protein] reductase FabG OS=Aquifex aeolicus GN=fabG PE=1 SV=1	1.0E-85	[10..258]	[4..247]
gi\|90429999, gi\|... - gi\|90586379\|ref\|ZP_01242077.1\| 3-oxoacyl-(acyl-carrier-protein) reductase [Staphylococcus aureus sub... gi\|82750835, gi\|... - gi\|82750835\|ref\|YP_416576.1\| 3-oxoacyl-(acyl-carrier protein) reductase [Staphylococcus aureus RF122... gi\|90426550, gi\|... - gi\|90584394\|ref\|ZP_01240127.1\| 3-oxoacyl-(acyl-carrier-protein) reductase [Staphylococcus aureus sub... FABG_STAAC - 3-oxoacyl-[acyl-carrier-protein] reductase FabG OS=Staphylococcus aureus (strain COL) GN=fabG PE=3 S... gi\|227558554, gi... - gi\|227558554\|ref\|ZP_03988601.1\| 3-oxoacyl-(acyl-carrier protein) reductase [Staphylococcus aureus su... gi\|227900345, gi... - gi\|227900345\|ref\|ZP_04018150.1\| 3-oxoacyl-(acyl-carrier protein) reductase [Staphylococcus aureus su... gi\|251814140, gi... - gi\|251814140\|ref\|ZP_04828613.1\| 3-oxoacyl-(acyl-carrier protein) reductase [Staphylococcus aureus su... gi\|253728585, gi... - gi\|253733531\|ref\|ZP_04867696.1\| 3-oxoacyl-(acyl-carrier protein) reductase [Staphylococcus aureus su... gi\|161509402, gi... - gi\|161509402\|ref\|YP_001575061.1\| 3-oxoacyl-[acyl-carrier-protein] reductase [Staphylococcus aureus s... FABG_STAAN - 3-oxoacyl-[acyl-carrier-protein] reductase FabG OS=Staphylococcus aureus (strain N315) GN=fabG PE=1 ... FABG_STAAR - 3-oxoacyl-[acyl-carrier-protein] reductase FabG OS=Staphylococcus aureus (strain MRSA252) GN=fabG PE... FABG_STAAS - 3-oxoacyl-[acyl-carrier-protein] reductase FabG OS=Staphylococcus aureus (strain MSSA476) GN=fabG PE... gi\|156721687, gi... - gi\|156979552\|ref\|YP_001441811.1\| 3-oxoacyl-#acyl-carrier protein reductase [Staphylococcus aureus su... gi\|25283236, gi\|... - pir\|\|B89896 3-oxoacyl-(acyl-carrier protein) reductase [imported] - Staphylococcus aureus (strain N3... FABG_STAAW - 3-oxoacyl-[acyl-carrier-protein] reductase FabG OS=Staphylococcus aureus (strain MW2) GN=fabG PE=3 S... FABG_STAAM - 3-oxoacyl-[acyl-carrier-protein] reductase FabG OS=Staphylococcus aureus (strain Mu50 / ATCC 700699)...	2.0E-85	[14..260]	[5..246]
gi\|17232674, gi\|... - gi\|17232674\|ref\|NP_489222.1\| oxidoreductase [Nostoc sp. PCC 7120], gi\|17134321\|dbj\|BAB76881.1\| oxido... gi\|25283433 - pir\|\|AF2453 oxidoreductase alr5182 [imported] - Nostoc sp. (strain PCC 7120)	3.0E-84	[5..257]	[33..280]
gi\|16800987 - gi\|16800987\|ref\|NP_471255.1\| hypothetical protein lin1921 [Listeria innocua Clip11262] gi\|25283285, gi\|... - pir\|\|AG1672 3-ketoacyl-acyl carrier protein reductase homolog fabG [imported] - Listeria innocua (st...	3.0E-84	[11..260]	[3..247]

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Predicted Domain #1

Region A:
Residues: [1-267]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQGRKAAER LAKKTVLITG ASAGIGKATA LEYLEASNGD MKLILAARRL EKLEELKKTI  60
   61 DQEFPNAKVH VAQLDITQAE KIKPFIENLP QEFKDIDILV NNAGKALGSD RVGQIATEDI 120
  121 QDVFDTNVTA LINITQAVLP IFQAKNSGDI VNLGSIAGRD AYPTGSIYCA SKFAVGAFTD 180
  181 SLRKELINTK IRVILIAPGL VETEFSLVRY RGNEEQAKNV YKDTTPLMAD DVADLIVYAT 240
  241 SRKQNTVIAD TLIFPTNQAS PHHIFRG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	231.40824
Match:	1i01A_
Description:	beta-keto acyl carrier protein reductase
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits