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View Structure Prediction Details

Protein: UBP8
Organism: Saccharomyces cerevisiae
Length: 471 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for UBP8.

Description E-value Query
Range
Subject
Range
gi|151945927 - gi|151945927|gb|EDN64159.1| ubiquitin-specific processing protease [Saccharomyces cerevisiae YJM789]
UBP8_YEAST - Ubiquitin carboxyl-terminal hydrolase 8 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=...
UBP8 - Ubiquitin-specific protease that is a component of the SAGA (Spt-Ada-Gcn5-Acetyltransferase) acetyla...
0.0 [1..471] [1..471]
gi|20140914, gi|... - gi|5689463|dbj|BAA83015.1| KIAA1063 protein [Homo sapiens], sp|Q9UPT9|UB22_HUMAN Ubiquitin carboxyl-...
2.0E-85 [4..468] [91..588]
gi|7673618 - gi|7673618|gb|AAF66953.1|AF229643_1 ubiquitin specific protease [Mus musculus]
3.0E-79 [20..468] [11..508]
gi|3800764 - gi|3800764|gb|AAC68865.1| ubiquitin specific protease 66 [Gallus gallus]
2.0E-76 [129..466] [38..376]
gi|5823525 - gi|5823525|gb|AAD53181.1|AF179590_1 ubiquitin-specific protease nonstop [Drosophila melanogaster]
3.0E-75 [4..467] [245..729]

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Predicted Domain #1
Region A:
Residues: [1-130]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSICPHIQQV FQNEKSKDGV LKTCNAARYI LNHSVPKEKF LNTMKCGTCH EINSGATFMC  60
   61 LQCGFCGCWN HSHFLSHSKQ IGHIFGINSN NGLLFCFKCE DYIGNIDLIN DAILAKYWDD 120
  121 VCTKTMVPSM 

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 21.638272
Match: PF02148
Description: Zn-finger in ubiquitin-hydrolases and other protein

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [131-179]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ERRDGLSGLI NMGSTCFMSS ILQCLIHNPY FIRHSMSQIH SNNCKVRSP

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 12.19382
Match: PF00442
Description: No description for PF00442 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [180-398]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DKCFSCALDK IVHELYGALN TKQASSSSTS TNRQTGFIYL LTCAWKINQN LAGYSQQDAH  60
   61 EFWQFIINQI HQSYVLDLPN AKEVSRANNK QCECIVHTVF EGSLESSIVC PGCQNNSKTT 120
  121 IDPFLDLSLD IKDKKKLYEC LDSFHKKEQL KDFNYHCGEC NSTQDAIKQL GIHKLPSVLV 180
  181 LQLKRFEHLL NGSNRKLDDF IEFPTYLNMK NYCSTKEKD

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [399-471]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KHSENGKVPD IIYELIGIVS HKGTVNEGHY IAFCKISGGQ WFKFNDSMVS SISQEEVLKE  60
   61 QAYLLFYTIR QVN

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 27.619789
Match: PF00443
Description: Ubiquitin carboxyl-terminal hydrolase

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle