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View Structure Prediction Details

Protein: TOM40
Organism: Saccharomyces cerevisiae
Length: 387 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TOM40.

Description E-value Query
Range
Subject
Range
gi|207342175 - gi|207342175|gb|EDZ70021.1| YMR203Wp-like protein [Saccharomyces cerevisiae AWRI1631]
TOM40_YEAST - Mitochondrial import receptor subunit TOM40 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)...
TOM40 - Component of the TOM (translocase of outer membrane) complex responsible for recognition and initial...
gi|190408429 - gi|190408429|gb|EDV11694.1| mitochondrial import receptor subunit TOM40 [Saccharomyces cerevisiae RM...
0.0 [1..387] [1..387]
tom40 - mitochondrial TOM complex subunit Tom40
TOM40_SCHPO - Probable mitochondrial import receptor subunit tom40 OS=Schizosaccharomyces pombe (strain 972 / ATCC...
6.0E-88 [37..368] [7..332]
gi|19112338 - gi|19112338|ref|NP_595546.1| mitochondrial outer membrane translocase [Schizosaccharomyces pombe 972...
gi|2853119, gi|7... - gi|7522289|pir||T40037 probable mitochondrial import receptor subunit - fission yeast (Schizosacchar...
7.0E-78 [37..345] [7..309]
TOM40_NEUCR, OM4... - Mitochondrial import receptor subunit tom-40 OS=Neurospora crassa GN=tom-40 PE=1 SV=1, (P24391) Mito...
TOM40_NEUCR - Mitochondrial import receptor subunit tom40 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / C...
4.0E-73 [35..373] [16..341]
TO401_ARATH - Mitochondrial import receptor subunit TOM40-1 OS=Arabidopsis thaliana GN=TOM40-1 PE=1 SV=3
1.0E-70 [35..358] [6..307]
VDAC1_RAT - Voltage-dependent anion-selective channel protein 1 OS=Rattus norvegicus GN=Vdac1 PE=1 SV=4
gi|74141951, gi|... - gi|74219876|dbj|BAE40522.1| unnamed protein product [Mus musculus], gi|74143985|dbj|BAE41292.1| unna...
3.0E-68 [57..360] [1..300]
gi|6650562 - gi|6650562|gb|AAF21906.1|AF109918_1 mitochondrial outer membrane protein MOM35 [Mus musculus]
8.0E-68 [58..359] [38..320]

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Predicted Domain #1
Region A:
Residues: [1-158]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAPTPLAEA SQIPTIPALS PLTAKQSKGN FFSSNPISSF VVDTYKQLHS HRQSLELVNP  60
   61 GTVENLNKEV SRDVFLSQYF FTGLRADLNK AFSMNPAFQT SHTFSIGSQA LPKYAFSALF 120
  121 ANDNLFAQGN IDNDLSVSGR LNYGWDKKNI SKVNLQIS

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [159-227]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DGQPTMCQLE QDYQASDFSV NVKTLNPSFS EKGEFTGVAV ASFLQSVTPQ LALGLETLYS  60
   61 RTDGSAPGD

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.886 0.237 mitochondrial outer membrane translocase complex d.15.7 Immunoglobulin-binding domains

Predicted Domain #3
Region A:
Residues: [228-387]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AGVSYLTRYV SKKQDWIFSG QLQANGALIA SLWRKVAQNV EAGIETTLQA GMVPITDPLM  60
   61 GTPIGIQPTV EGSTTIGAKY EYRQSVYRGT LDSNGKVACF LERKVLPTLS VLFCGEIDHF 120
  121 KNDTKIGCGL QFETAGNQEL LMLQQGLDAD GNPLQALPQL 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle