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View Structure Prediction Details

Protein: YMR173W-A
Organism: Saccharomyces cerevisiae
Length: 394 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YMR173W-A.

Description E-value Query
Range
Subject
Range
ZAN_MOUSE - Zonadhesin OS=Mus musculus GN=Zan PE=1 SV=1
0.004 [2..284] [731..993]

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Predicted Domain #1
Region A:
Residues: [1-66]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTTPTTTTH MVLITTIHMV LTTMIHMALT TMIHMAPTTM IHMALTTMIP TVLPTRRRAL  60
   61 MVLTMT

[Run NCBI BLAST on this sequence.]

Detection Method: ORFEUS
Confidence: 11.35
Match: 1ldvA
Description: No description for 1ldvA was found.

Predicted Domain #2
Region A:
Residues: [67-394]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IRTAPATTMT LTVPTTMTLT VPTTMTLTVP TMTTLTVRQT RIRALTVPTM TILMALTMMI  60
   61 HMVLPTRRRV LMVPATTIRM VLTTMIHMVL TTMIHMALTT MIPTVLPTRR RALMVLTMTI 120
  121 RTAPATTMTL TVPTMTTLTV RQTRIRALTV LLATMILTDL PITTTLTVLP TRRRVLMVPT 180
  181 MTILMALTMM IHMVLPTRRR VLMVPATTIR MVLTTMIPTV LLTKRRVLMV PTTMIHTAPA 240
  241 TTMTLTVPTM TTLTVPLIET RTPMGLPTTV HPTMMTLMVH LIEAVVINTV VTTITKFLDV 300
  301 FDKKNILLCL DLSMKILCMS CGYVSAGK

[Run NCBI BLAST on this sequence.]

Detection Method: ORFEUS
Confidence: 9.26
Match: 1m2vB
Description: Sec24
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle