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View Structure Prediction Details

Protein: MRPS8
Organism: Saccharomyces cerevisiae
Length: 155 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MRPS8.

Description E-value Query
Range
Subject
Range
ENSPTRT00000014415 - null
gi|90074910 - gi|90074910|dbj|BAE87135.1| unnamed protein product [Macaca fascicularis]
ENSCJAT000000436... - null, null
RS15A_RAT - 40S ribosomal protein S15a OS=Rattus norvegicus GN=Rps15a PE=1 SV=2
RPS15A - ribosomal protein S15a
tr|G3IKE2|G3IKE2... - 40S ribosomal protein S15a OS=Cricetulus griseus GN=I79_024343 PE=3 SV=1
gi|73958787, gi|... - gi|73958789|ref|XP_862234.1| PREDICTED: similar to ribosomal protein S15a isoform 10 [Canis familiar...
tr|F7BLU1|F7BLU1... - Ribosomal protein S15a OS=Equus caballus OX=9796 GN=RPS15A PE=3 SV=1
RS15A_MOUSE - 40S ribosomal protein S15a OS=Mus musculus GN=Rps15a PE=1 SV=2
CCDS10571.1_1 - null
RS15A_BOVIN - 40S ribosomal protein S15a OS=Bos taurus GN=RPS15A PE=2 SV=1
ENSMMUG000000055... - null, null, null, null
ENSOCUP000000159... - pep:novel chromosome:oryCun2:6:9242441:9246952:1 gene:ENSOCUG00000000179 transcript:ENSOCUT000000001...
9.0E-41 [3..153] [4..128]
gi|15294043 - gi|15294043|gb|AAK95198.1|AF402824_1 40S ribosomal protein S15a [Ictalurus punctatus]
1.0E-40 [3..153] [1..125]
gi|76780132, gi|... - gi|76780132|gb|AAI06350.1| MGC130892 protein [Xenopus laevis], gi|67677960|gb|AAH97585.1| MGC114789 ...
gi|542157969|ref... - PREDICTED: 40S ribosomal protein S15a [Zonotrichia albicollis]
gi|18000277 - gi|18000277|gb|AAL54900.1|AF159546_1 ribosomal protein S15 isoform [Lapemis hardwickii]
gi|118098060, gi... - gi|118098060|ref|XP_425249.2| PREDICTED: similar to ribosomal protein S15 isoform 2 [Gallus gallus],...
gi|156717896, gi... - gi|156717896|ref|NP_001096489.1| hypothetical protein LOC100125111 [Xenopus (Silurana) tropicalis], ...
2.0E-40 [3..153] [4..128]
gi|7507776 - gi|7507776|pir||T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans
3.0E-40 [3..153] [4..128]
gi|7340072 - gi|7340072|gb|AAF61072.1|AF220553_1 40S ribosomal protein S15A [Paralichthys olivaceus]
gi|124300817 - gi|124300817|dbj|BAF45904.1| ribosomal protein S15a [Solea senegalensis]
gi|32454278 - gi|32454278|gb|AAP82938.1| 40S ribosomal protein S15A [Hippocampus comes]
4.0E-40 [3..153] [4..128]
gi|54643848, gi|... - gi|54643848|gb|EAL32591.1| GA15195 [Drosophila pseudoobscura pseudoobscura], gi|125983534|ref|XP_001...
gi|125983534|ref... - GA15195-PA [Drosophila pseudoobscura], GA15195 [Drosophila pseudoobscura pseudoobscura]
RS15A_DROYA - 40S ribosomal protein S15a OS=Drosophila yakuba GN=RpS15Aa PE=2 SV=3
RpS15Aa-PC, RpS1... - The gene Ribosomal protein S15Aa is referred to in FlyBase by the symbol Dmel\RpS15Aa (CG2033, FBgn0...
gi|195059055, gi... - gi|195059055|ref|XP_001995555.1| GH17815 [Drosophila grimshawi], gi|193896341|gb|EDV95207.1| GH17815...
gi|195133640, gi... - gi|195133640|ref|XP_002011247.1| GI16425 [Drosophila mojavensis], gi|193907222|gb|EDW06089.1| GI1642...
gi|194108633, gi... - gi|195168739|ref|XP_002025188.1| GL26726 [Drosophila persimilis], gi|194108633|gb|EDW30676.1| GL2672...
gi|195352846, gi... - gi|195352846|ref|XP_002042922.1| GM11496 [Drosophila sechellia], gi|194126969|gb|EDW49012.1| GM11496...
gi|195398721, gi... - gi|195398721|ref|XP_002057969.1| GJ15828 [Drosophila virilis], gi|194150393|gb|EDW66077.1| GJ15828 [...
gi|195456726, gi... - gi|195456726|ref|XP_002075260.1| GK16027 [Drosophila willistoni], gi|194171345|gb|EDW86246.1| GK1602...
gi|194204241, gi... - gi|195566562|ref|XP_002106849.1| GD15889 [Drosophila simulans], gi|194204241|gb|EDX17817.1| GD15889 ...
gi|220960446, gi... - gi|220960446|gb|ACL92759.1| RpS15Aa-PA [synthetic construct], gi|220948968|gb|ACL87027.1| RpS15Aa-PA...
gi|194768000, gi... - gi|194768000|ref|XP_001966102.1| GF19502 [Drosophila ananassae], gi|190622987|gb|EDV38511.1| GF19502...
gi|190649932, gi... - gi|194895562|ref|XP_001978283.1| GG19508 [Drosophila erecta], gi|190649932|gb|EDV47210.1| GG19508 [D...
9.0E-39 [3..153] [4..128]
RS8_GEOSE - 30S ribosomal protein S8 OS=Geobacillus stearothermophilus GN=rpsH PE=1 SV=2
1.0E-38 [1..154] [1..130]
gi|15213820 - gi|15213820|gb|AAK92185.1|AF400213_1 ribosomal protein S15A [Spodoptera frugiperda]
7.0E-38 [3..153] [4..127]

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Predicted Domain #1
Region A:
Residues: [1-90]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLVKLANTC AHLQNCSKVR VALTSIPYTK LQLQFAYNLY QQGFLSSLQK GSTMGPDKDF  60
   61 VEVTPDNIST RRLWVGLKYR DNKPVLSSCK 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 74.228787
Match: 1seiA_
Description: Ribosomal protein S8
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
structural constituent of ribosome 9.91574154879999 bayes_pls_golite062009
structural molecule activity 9.33953790706737 bayes_pls_golite062009
RNA binding 1.37413951383134 bayes_pls_golite062009
binding 1.233710741259 bayes_pls_golite062009
nucleic acid binding 0.748509060999477 bayes_pls_golite062009
protein binding 0.569993864025864 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [91-155]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LISKPNSRIH LPMEDMKKLC SGVTIRNIKP LQPGELILVR AHNNIMDINE AISKKLDGEV  60
   61 LCRVK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 74.228787
Match: 1seiA_
Description: Ribosomal protein S8
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle