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View Structure Prediction Details

Protein: CIN4
Organism: Saccharomyces cerevisiae
Length: 191 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CIN4.

Description E-value Query
Range
Subject
Range
gi|1370166 - gi|1370166|emb|CAA98160.1| RAB1C [Lotus japonicus]
3.0E-68 [9..190] [1..172]
gi|7507776 - gi|7507776|pir||T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans
4.0E-68 [9..190] [1..172]
ARA5_ARATH - Ras-related protein ARA-5 - Arabidopsis thaliana (Mouse-ear cress)
4.0E-68 [9..190] [56..227]
gi|4586580 - gi|4586580|dbj|BAA76422.1| rab-type small GTP-binding protein [Cicer arietinum]
6.0E-68 [9..190] [1..172]
RIC1_ORYSA - (P40392) Ras-related protein RIC1
7.0E-68 [9..190] [1..172]
gi|1381678 - gi|1381678|gb|AAB97115.1| small GTP-binding protein [Glycine max]
2.0E-67 [9..190] [1..172]
YPT1_PHYIN - Ras-like GTP-binding protein YPT1 OS=Phytophthora infestans GN=YPT1 PE=3 SV=1
2.0E-67 [9..190] [1..172]

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Predicted Domain #1
Region A:
Residues: [1-191]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGLLSIIRKQ KLRDKEIRCL ILGLDNSGKS TIVNKLLPKD EQNNDGIMPT VGFQIHSLMI  60
   61 KDVTISLWDI GGQRTLRPFW DNYFDKTQAM IWCIDVSLSM RFDETLQELK ELINRDENRI 120
  121 GYECAVIVVL NKIDLVEDKS ELHRRCLLVE SELKCLFKPD IRIELVKCSG VTGEGIDNLR 180
  181 DRLVESCHFT Q

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 286.68867
Match: 1kshA_
Description: ADP-ribosylation factor
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
transporter activity 3.10463051760206 bayes_pls_golite062009
transmembrane transporter activity 2.95886887664984 bayes_pls_golite062009
nucleoside-triphosphatase activity 2.95079405147356 bayes_pls_golite062009
pyrophosphatase activity 2.87427509025394 bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides 2.85499564954033 bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 2.85178667290149 bayes_pls_golite062009
motor activity 2.79327761685782 bayes_pls_golite062009
microtubule motor activity 2.74365461017633 bayes_pls_golite062009
binding 2.64537357529343 bayes_pls_golite062009
primary active transmembrane transporter activity 2.61775212528604 bayes_pls_golite062009
P-P-bond-hydrolysis-driven transmembrane transporter activity 2.61467977505707 bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances 2.57552435627908 bayes_pls_golite062009
ATPase activity, coupled to transmembrane movement of substances 2.57107347424517 bayes_pls_golite062009
ATPase activity, coupled to movement of substances 2.57054427875021 bayes_pls_golite062009
active transmembrane transporter activity 2.50494515048649 bayes_pls_golite062009
ATPase activity, coupled 2.43862163407966 bayes_pls_golite062009
ATPase activity 2.39535714892224 bayes_pls_golite062009
amine transmembrane transporter activity 2.29486577878686 bayes_pls_golite062009
nucleic acid binding 2.09956015274464 bayes_pls_golite062009
transcription regulator activity 2.09345198747025 bayes_pls_golite062009
substrate-specific transporter activity 1.91091452720653 bayes_pls_golite062009
guanyl nucleotide binding 1.89320355239381 bayes_pls_golite062009
guanyl ribonucleotide binding 1.88721318481223 bayes_pls_golite062009
GTP binding 1.87900088157196 bayes_pls_golite062009
DNA binding 1.87765278833074 bayes_pls_golite062009
organic acid transmembrane transporter activity 1.77111739879769 bayes_pls_golite062009
carboxylic acid transmembrane transporter activity 1.75695995185278 bayes_pls_golite062009
protein transporter activity 1.71214667007262 bayes_pls_golite062009
RNA helicase activity 1.63960194106079 bayes_pls_golite062009
ATP-dependent RNA helicase activity 1.61735400124552 bayes_pls_golite062009
RNA-dependent ATPase activity 1.60404584546501 bayes_pls_golite062009
hydrolase activity 1.57549510726226 bayes_pls_golite062009
substrate-specific transmembrane transporter activity 1.56325751172863 bayes_pls_golite062009
signal recognition particle binding 1.46975774710831 bayes_pls_golite062009
GTPase activity 1.23010905798386 bayes_pls_golite062009
catalytic activity 1.00104173493322 bayes_pls_golite062009
ATP binding 0.98146619596929 bayes_pls_golite062009
tubulin binding 0.979946830272106 bayes_pls_golite062009
ion transmembrane transporter activity 0.977237423302079 bayes_pls_golite062009
adenyl ribonucleotide binding 0.949788783884952 bayes_pls_golite062009
adenyl nucleotide binding 0.931486373329219 bayes_pls_golite062009
purine nucleotide binding 0.929901285538132 bayes_pls_golite062009
nucleotide binding 0.922442819194247 bayes_pls_golite062009
purine ribonucleotide binding 0.920987930180051 bayes_pls_golite062009
ribonucleotide binding 0.920926158369519 bayes_pls_golite062009
microtubule binding 0.907162506177187 bayes_pls_golite062009
kinase activity 0.691112783105676 bayes_pls_golite062009
transcription factor activity 0.682439846757997 bayes_pls_golite062009
general RNA polymerase II transcription factor activity 0.652333406433794 bayes_pls_golite062009
helicase activity 0.6191010101321 bayes_pls_golite062009
amino acid transmembrane transporter activity 0.585668369219566 bayes_pls_golite062009
cation transmembrane transporter activity 0.557919489256916 bayes_pls_golite062009
ribonucleoprotein binding 0.53788302029845 bayes_pls_golite062009
cytoskeletal protein binding 0.500462538667228 bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups 0.499834566483656 bayes_pls_golite062009
signal transducer activity 0.471461153565539 bayes_pls_golite062009
molecular transducer activity 0.471461153565539 bayes_pls_golite062009
drug transmembrane transporter activity 0.38711726712063 bayes_pls_golite062009
transition metal ion transmembrane transporter activity 0.305627755818843 bayes_pls_golite062009
ATP-dependent helicase activity 0.29664013896754 bayes_pls_golite062009
purine NTP-dependent helicase activity 0.29664013896754 bayes_pls_golite062009
hydrogen ion transporting ATP synthase activity, rotational mechanism 0.213018989352421 bayes_pls_golite062009
structural constituent of ribosome 0.208665086324262 bayes_pls_golite062009
protein binding 0.170837278876362 bayes_pls_golite062009
inorganic cation transmembrane transporter activity 0.123304946374679 bayes_pls_golite062009
microfilament motor activity 0.10236059675512 bayes_pls_golite062009
phosphotransferase activity, alcohol group as acceptor 0.0430764033739892 bayes_pls_golite062009
protein kinase activity 0.0364322017534667 bayes_pls_golite062009
actin binding 0.00482938540552702 bayes_pls_golite062009

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