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View Structure Prediction Details

Protein: GAT2
Organism: Saccharomyces cerevisiae
Length: 560 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GAT2.

Description E-value Query
Range		 Subject
Range
gi|12802699 - gi|12802699|gb|AAK08066.1|AF320305_1 AreA [Aspergillus oryzae]
 269.0 [0..4] [524..166]
AREA_ASPNG - Nitrogen regulatory protein areA OS=Aspergillus niger GN=areA PE=3 SV=1
 265.0 [0..2] [524..180]
NRFA_PENUR - Nitrogen regulatory protein nrfA OS=Penicillium urticae GN=nrfA PE=3 SV=1
 259.0 [0..3] [527..167]
AREA_EMENI - Nitrogen regulatory protein areA OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / ...
AREA_EMENI - Nitrogen regulatory protein areA OS=Emericella nidulans GN=areA PE=1 SV=2
 258.0 [0..3] [524..184]
gi|5002306 - gi|5002306|gb|AAD37409.1|AF148539_1 major nitrogen regulatory protein [Aspergillus parasiticus]
 255.0 [0..4] [524..178]
AREA_PENRO - Nitrogen regulatory protein areA OS=Penicillium roqueforti GN=AREA PE=3 SV=2
 255.0 [0..4] [527..160]
gi|2133281 - gi|2133281|pir||S51493 major nitrogen regulation protein - Penicillium chrysogenum (strain Q176)
 249.0 [0..4] [527..164]
gi|3218331 - gi|3218331|emb|CAA07052.1| nitrogen response regulator [Metarhizium anisopliae]
 247.0 [0..3] [558..169]

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Predicted Domain #1
Region A:
Residues: [1-86] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQAPNIYPFS QTQPQALPGF TYGPPQLVFD HSAPRVDPLH STVTINSPLP LQHYNGPNAH  60
   61 INSANNNYAY YYHHPNNNDN NNHSNN

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [87-446] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TIKNNNINSV LPAVNIQISN NSHYRNTHQI PSAPQRLVSI IPDPHMPPNI SHFQLNNIHP  60
   61 QMHAPVATDI HFQQVPVYNK TNNGIGTDNI NNDKPVNSNQ NEVLDNIDER SCHEINRVVS 120
  121 FSKHFENNEL TTTANDLNIQ STMDELAKLK SLSNSTHFRQ SIATQNFHSL QNHITTIENR 180
  181 LASLLTDRQQ EQQQLKQQES EKESSSPFSN KIKLPSLQEL TDSISTQHLP TFYDNKRHAS 240
  241 DTDLKSSTLH GPLYHRHAFL STSSSSPSPT AGSAPLQKLQ VPRQDDPNDK KMNISSSPFN 300
  301 SITYIPNTTL SPMVQTQLKN LTTSNLNTKK KNNRGRPRAI QRQPTLTTSS HFINNSNPGA 360
  361

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [447-560] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AAVSTTTPAA NSDEKNPNAK KIIEFCFHCG ETETPEWRKG PYGTRTLCNA CGLFYRKVTK  60
   61 KFGSKSSNLL LRYRRSIDLA NDRRIPDFIT IPNRFIHDMD NDQTLDSEYN TILQ

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 43.39794
Match: 1gnfA
Description: SOLUTION STRUCTURE OF THE N-TERMINAL ZINC FINGER OF MURINE GATA-1, NMR, 25 STRUCTURES
Matching Structure (courtesy of the PDB):
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle