YRC Public Data Repository - Protein Structure Prediction

Protein:	PKR1
Organism:	Saccharomyces cerevisiae
Length:	122 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PKR1.

Description	E-value	Query Range	Subject Range
PKR1_SCHPO - V-type ATPase assembly factor pkr1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pkr1 PE... SPBP23A10.02 - conserved fungal protein	172.0	[0..3]	[117..2]
gi\|50425275, gi\|... - gi\|50425275\|ref\|XP_461229.1\| hypothetical protein DEHA0F21582g [Debaryomyces hansenii CBS767], gi\|49... gi\|49656898 - gi\|49656898\|emb\|CAG89617.1\| DEHA2F20306p [Debaryomyces hansenii]	108.0	[0..3]	[121..2]
gi\|50311685, gi\|... - gi\|50311685\|ref\|XP_455869.1\| unnamed protein product [Kluyveromyces lactis], gi\|49645005\|emb\|CAG9857... gi\|49645005 - gi\|49645005\|emb\|CAG98577.1\| KLLA0F17567p [Kluyveromyces lactis]	107.0	[0..1]	[118..1]
gi\|49527697 - gi\|49527697\|emb\|CAG61346.1\| unnamed protein product [Candida glabrata] gi\|50291905, gi\|... - gi\|50291905\|ref\|XP_448385.1\| unnamed protein product [Candida glabrata], gi\|49527697\|emb\|CAG61346.1\|...	107.0	[0..3]	[84..2]
gi\|68485666, gi\|... - gi\|68485666\|ref\|XP_713211.1\| potential SMK toxin resistance protein [Candida albicans SC5314], gi\|46... orf19.2378 - orf19.2378 CGDID:CAL0000790 Assembly 19, Contig19-10148 (2071, 1718) CDS, reverse complemented, tran...	80.0	[0..3]	[83..2]
gi\|111059234 - gi\|111059234\|gb\|EAT80354.1\| hypothetical protein SNOG_11942 [Phaeosphaeria nodorum SN15]	80.0	[0..1]	[121..1]
gi\|28926087, gi\|... - gi\|32408409\|ref\|XP_324686.1\| hypothetical protein [Neurospora crassa], gi\|28926087\|gb\|EAA35074.1\| co... gi\|85112254 - gi\|85112254\|ref\|XP_964310.1\| hypothetical protein NCU00506 [Neurospora crassa OR74A]	78.0	[0..1]	[119..1]
gi\|88181854, gi\|... - gi\|88181854\|gb\|EAQ89322.1\| hypothetical protein CHGG_05941 [Chaetomium globosum CBS 148.51], gi\|1161...	73.0	[0..1]	[113..1]
gi\|38104410, gi\|... - gi\|39945516\|ref\|XP_362295.1\| hypothetical protein MGG_04740 [Magnaporthe grisea 70-15], gb\|EAA50981....	72.0	[0..1]	[122..1]

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Predicted Domain #1

Region A:
Residues: [1-122]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANFFVRLWE SVFEPGTSPQ LIIATHVSFV ALLLTLIWLI YATNGNIHFY ALFCISLLLW  60
   61 ITVIWFINEL SHVKLKDNDE LDKDANKKDD SAIKEDSEDK QESGKSTSTA RRTQAQSRSR 120
  121 KA

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	49.060481
Match:	PF08636.1
Description:	No description for PF08636.1 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.851	N/A	N/A	a.7.3	Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits