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View Structure Prediction Details

Protein: YMR111C
Organism: Saccharomyces cerevisiae
Length: 462 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YMR111C.

Description E-value Query
Range
Subject
Range
YMR111C - Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the nucleus...
YM01_YEAST - Uncharacterized protein YMR111C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YMR111C ...
0.0 [1..462] [1..462]
gi|50309991, gi|... - gi|50309991|ref|XP_455009.1| unnamed protein product [Kluyveromyces lactis], gi|49644144|emb|CAH0009...
gi|12381870, gi|... - gi|49644144|emb|CAH00096.1| KLLA0E23431p [Kluyveromyces lactis], gi|12381870|dbj|BAB21245.1| KlGcr1p...
9.0E-71 [218..407] [521..713]

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Predicted Domain #1
Region A:
Residues: [1-201]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPAREYNYVE GFGGYGSLDD DDSDRDSERR NHDLGQRTIT TSPTGVSRHA ALNRYMIPGR  60
   61 INPLFRPTDA AQPPIVSTST SASATEPTNR IGPGRIKETP ETNFNAFLIA QLTRMEEQNA 120
  121 NLKEEISLMK KEQELFFLEN QKKLEKGFKD INKYVEDVSA MKEVFKEVVG IMTGERIRFI 180
  181 DHTGENVTPQ EAARVGNPST S

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [202-462]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TQAHQSQSRS TNWQEYSMHA SILAGDPRIK PEPGLSDFEN GEYDGNESDE NATTRNLPLN  60
   61 NPDSVSNADD SNNQLDGTGN ENDIRNRRGC VGTSYKLNRA IQNVTDAARE YFEGLPGQPS 120
  121 VLSLERRYGS TWRRSAKERT LFTKRMTIIK RIIDIKDDPS KYGLSLPENK ISRNQAIKVV 180
  181 ENIRLGNNTF KGHHCRLSMS QLYEYFSKKM DKLEDYSLTL KRRGKPRRIF LLEEREARLS 240
  241 LQQPHSIPNS STGTPEHDQD T

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [368-462]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PENKISRNQA IKVVENIRLG NNTFKGHHCR LSMSQLYEYF SKKMDKLEDY SLTLKRRGKP  60
   61 RRIFLLEERE ARLSLQQPHS IPNSSTGTPE HDQDT

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle