| Protein: | CTF18 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 741 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CTF18.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..741] | [1..741] |
|
|
0.0 | [49..654] | [82..644] |
|
|
0.0 | [49..654] | [116..677] |
|
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0.0 | [44..650] | [101..662] |
|
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0.0 | [59..677] | [114..664] |
|
|
0.0 | [12..659] | [55..649] |
|
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0.0 | [91..659] | [115..618] |
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0.0 | [112..659] | [165..647] |
|
Region A: Residues: [1-122] |
1 11 21 31 41 51
| | | | | |
1 MVDTAPYIGS LGRSSLFDTG DIEQAPGNNA IGINEEDIHA FVSSTGETVQ LKKKPAKLAT 60
61 GNISLYTNPD TVWRSDDTYG ININYLLDKI EASGDDRTNA QKTSPITGKI GSDTLWVEKW 120
121 RP
|
| Detection Method: |  |
| Confidence: | 104.165202 |
| Match: | 1e32A_ |
| Description: | Membrane fusion atpase p97 N-terminal domain , P97-Nn; Membrane fusion atpase p97, D1 domain; Membrane fusion atpase p97 domain 2, P97-Nc |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [123-319] |
1 11 21 31 41 51
| | | | | |
1 KKFLDLVGNE KTNRRMLGWL RQWTPAVFKE QLPKLPTEKE VSDMELDPLK RPPKKILLLH 60
61 GPPGIGKTSV AHVIAKQSGF SVSEINASDE RAGPMVKEKI YNLLFNHTFD TNPVCLVADE 120
121 IDGSIESGFI RILVDIMQSD IKATNKLLYG QPDKKDKKRK KKRSKLLTRP IICICNNLYA 180
181 PSLEKLKPFC EIIAVKR
|
| Detection Method: | |
| Confidence: | 104.165202 |
| Match: | 1e32A_ |
| Description: | Membrane fusion atpase p97 N-terminal domain , P97-Nn; Membrane fusion atpase p97, D1 domain; Membrane fusion atpase p97 domain 2, P97-Nc |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [320-441] |
1 11 21 31 41 51
| | | | | |
1 PSDTTLLERL NLICHKENMN IPIKAINDLI DLAQGDVRNC INNLQFLASN VDSRDSSASD 60
61 KPACAKNTWA SSNKDSPISW FKIVNQLFRK DPHRDIKEQF YELLNQVELN GNSDRILQGC 120
121 FN
|
| Detection Method: | |
| Confidence: | 104.165202 |
| Match: | 1e32A_ |
| Description: | Membrane fusion atpase p97 N-terminal domain , P97-Nn; Membrane fusion atpase p97, D1 domain; Membrane fusion atpase p97 domain 2, P97-Nc |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [442-654] |
1 11 21 31 41 51
| | | | | |
1 IFPYVKYSDN GIRKPANISD WLFFHDLMYQ SMYAHNGELL RYSALVPLVF FQTFGDIANK 60
61 DDIRMKNSEY EQRELKRANS DIVSLIMRHI SVQSPLMASF TDRKSLIFEI LPYLDSMISS 120
121 DFNKIRNLKL KQAIMEELVQ LLKSFQLNLI QNRSEGFDVR GGLTIDPPID EVVLLNPKHI 180
181 NEVQHKRANN LSSLLAKIEE NRAKKRHIDQ VTE
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [655-741] |
1 11 21 31 41 51
| | | | | |
1 DRLQSQEMHS KKVKTGLNSS SSTIDFFKNQ YGLLKQTQEL EETQKTIGSD ETNQADDCNQ 60
61 TVKIWVKYNE GFSNAVRKNV TWNNLWE
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.409 | a.39.1 | EF-hand |
| View | Download | 0.376 | f.28.1 | Nonheme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) |
| View | Download | 0.456 | a.60.9 | lambda integrase-like, N-terminal domain |
| View | Download | 0.388 | a.2.1 | GreA transcript cleavage protein, N-terminal domain |
| View | Download | 0.481 | i.1.1 | Ribosome and ribosomal fragments |
| View | Download | 0.371 | a.2.2 | Ribosomal protein L29 (L29p) |
| View | Download | 0.367 | a.13.1 | alpha-2-Macroglobulin receptor associated protein (RAP) domain 1 |
| View | Download | 0.351 | a.56.1 | CO dehydrogenase ISP C-domain like |
| View | Download | 0.310 | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
| View | Download | 0.293 | a.77.1 | DEATH domain |
| View | Download | 0.271 | d.188.1 | Prokaryotic ribosomal protein L17 |
| View | Download | 0.270 | a.74.1 | Cyclin-like |
| View | Download | 0.268 | d.58.20 | NAD-binding domain of HMG-CoA reductase |
| View | Download | 0.266 | a.7.2 | Enzyme IIa from lactose specific PTS, IIa-lac |
| View | Download | 0.262 | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.259 | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.259 | f.15.1 | Small-conductance potassium channel |
| View | Download | 0.256 | a.112.1 | Description not found. |
| View | Download | 0.254 | a.4.12 | TrpR-like |
| View | Download | 0.247 | a.59.1 | PAH2 domain |
| View | Download | 0.245 | f.17.1 | F1F0 ATP synthase subunit C |
| View | Download | 0.235 | d.228.1 | Replication modulator SeqA, C-terminal DNA-binding domain |
| View | Download | 0.234 | d.58.7 | RNA-binding domain, RBD |
| View | Download | 0.232 | a.144.1 | PABC (PABP) domain |
| View | Download | 0.223 | a.47.2 | t-snare proteins |
| View | Download | 0.218 | a.24.17 | Group V grass pollen allergen |
| View | Download | 0.214 | a.77.1 | DEATH domain |
| View | Download | 0.211 | a.39.1 | EF-hand |
| View | Download | 0.211 | a.22.1 | Histone-fold |
| View | Download | 0.210 | a.29.2 | Bromodomain |
| View | Download | 0.210 | a.59.1 | PAH2 domain |
| View | Download | 0.209 | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.203 | d.150.1 | 4'-phosphopantetheinyl transferase |
| View | Download | 0.203 | a.44.1 | Disulphide-bond formation facilitator (DSBA), insertion domain |
| View | Download | 0.202 | a.7.2 | Enzyme IIa from lactose specific PTS, IIa-lac |
