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View Structure Prediction Details

Protein: VPS20
Organism: Saccharomyces cerevisiae
Length: 221 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for VPS20.

Description E-value Query
Range
Subject
Range
gi|30681419, gi|... - gi|8567798|gb|AAF76370.1| unknown protein [Arabidopsis thaliana], gi|30681419|ref|NP_187675.2| VPS60...
2.0E-36 [2..220] [6..233]
CHMP5_MOUSE - Charged multivesicular body protein 5 OS=Mus musculus GN=Chmp5 PE=1 SV=1
CHMP5_RAT - Charged multivesicular body protein 5 OS=Rattus norvegicus GN=Chmp5 PE=2 SV=1
9.0E-36 [2..218] [6..219]
gi|16876827, gi|... - gi|20127558|ref|NP_057494.2| chromatin modifying protein 5 [Homo sapiens], gi|16876827|gb|AAH16698.1...
2.0E-35 [2..218] [6..219]
CE06928 - WBGene00016497 status:Predicted TR:Q22916 protein_id:AAC25860.1
3.0E-34 [3..210] [57..261]
VPS20 - Myristoylated subunit of ESCRTIII, the endosomal sorting complex required for transport of transmemb...
VPS20_YEAST - Vacuolar protein sorting-associated protein 20 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S28...
gi|207342350 - gi|207342350|gb|EDZ70137.1| YMR077Cp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|190408308 - gi|190408308|gb|EDV11573.1| vacuolar protein sorting protein 20 [Saccharomyces cerevisiae RM11-1a]
7.0E-32 [1..221] [1..221]
CG6259-PA, FBpp0... - This gene is referred to in FlyBase by the symbol Dmel\CG6259 (CG6259, FBgn0036740). It is a protein...
gi|220948198, gi... - gi|220957426|gb|ACL91256.1| CG6259-PA [synthetic construct], gi|220948198|gb|ACL86642.1| CG6259-PA [...
7.0E-32 [2..219] [6..223]

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Predicted Domain #1
Region A:
Residues: [1-221]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGQKSSKVHI TKTDRAILEV KRSKDEIHKF TRRTDNLILV EKSQLKDLIR KNPENYKSNM  60
   61 KVRFLLKRIH YQEHLLQQAS DQLINLENMV STLEFKMVEK QFINGLKNGN EILKKLNKEF 120
  121 SNVDELMDDV QDQIAYQNEI NETLSRSLVG TSNYEDDLDK ELDALESELN PEKMNNAKVA 180
  181 NMPSTEGLPS LPQGEQTEQK EREEFATEER SDTKEPLALL S

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 12.69897
Match: 1i84S_
Description: Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle