| Protein: | PDS5 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 1277 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PDS5.
| Description | E-value | Query Range |
Subject Range |
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0.0 | [1..1277] | [1..1277] |
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0.0 | [8..1271] | [12..1227] |
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0.0 | [5..1251] | [23..1327] |
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0.0 | [4..1211] | [23..1336] |
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0.0 | [17..1165] | [7..1145] |
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0.0 | [6..1196] | [1..1128] |
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Region A: Residues: [1-698] |
1 11 21 31 41 51
| | | | | |
1 MAKGAVTKLK FNSPIISTSD QLISTNELLD RLKALHEELA SLDQDNTDLT GLDKYRDALV 60
61 SRKLLKHKDV GIRAFTACCL SDILRLYAPD APYTDAQLTD IFKLVLSQFE QLGDQENGYH 120
121 IQQTYLITKL LEYRSIVLLA DLPSSNNLLI ELFHIFYDPN KSFPARLFNV IGGILGEVIS 180
181 EFDSVPLEVL RLIFNKFLTY NPNEIPEGLN VTSDCGYEVS LILCDTYSNR MSRHLTKYYS 240
241 EIIHEATNDD NNSRLLTVVV KLHKLVLRLW ETVPELINAV IGFIYHELSS ENELFRKEAT 300
301 KLIGQILTSY SDLNFVSTHS DTFKAWISKI ADISPDVRVE WTESIPQIIA TREDISKELN 360
361 QALAKTFIDS DPRVRRTSVM IFNKVPVTEI WKNITNKAIY TSLLHLAREK HKEVRELCIN 420
421 TMAKFYSNSL NEIERTYQNK EIWEIIDTIP STLYNLYYIN DLNINEQVDS VIFEYLLPFE 480
481 PDNDKRVHRL LTVLSHFDKK AFTSFFAFNA RQIKISFAIS KYIDFSKFLN NQESMSSSQG 540
541 PIVMNKYNQT LQWLASGLSD STKAIDALET IKQFNDERIF YLLNACVTND IPFLTFKNCY 600
601 NELVSKLQTP GLFKKYNIST GASIMPRDIA KVIQILLFRA SPIIYNVSNI SVLLNLSNNS 660
661 DAKQLDLKRR ILDDISKVNP TLFKDQIRTL KTIIKDLD
|
| Detection Method: |  |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [699-840] |
1 11 21 31 41 51
| | | | | |
1 DPDAEKNDNL SLEEALKTLY KASKTLKDQV DFDDTFFFTK LYDFAVESKP EITKYATKLI 60
61 ALSPKAEETL KKIKIRILPL DLQKDKYFTS HIIVLMEIFK KFPHVLNDDS TDIISYLIKE 120
121 VLLSNQVVGD SKKEIDWVED SL
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.372 | a.39.1 | EF-hand |
| View | Download | 0.513 | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.377 | a.73.1 | Retrovirus capsid protein, N-terminal core domain |
| View | Download | 0.426 | a.39.2 | Insect pheromon/odorant-binding proteins |
| View | Download | 0.320 | c.54.1 | IIA domain of mannose transporter, IIA-Man |
| View | Download | 0.318 | a.118.8 | TPR-like |
| View | Download | 0.302 | d.58.39 | Glutamyl tRNA-reductase catalytic, N-terminal domain |
| View | Download | 0.300 | a.121.1 | Tetracyclin repressor-like, C-terminal domain |
| View | Download | 0.281 | a.39.1 | EF-hand |
| View | Download | 0.272 | a.23.3 | Methane monooxygenase hydrolase, gamma subunit |
| View | Download | 0.268 | b.84.2 | Rudiment single hybrid motif |
| View | Download | 0.266 | a.77.1 | DEATH domain |
| View | Download | 0.256 | a.77.1 | DEATH domain |
| View | Download | 0.251 | a.131.1 | Peridinin-chlorophyll protein |
| View | Download | 0.247 | a.118.8 | TPR-like |
| View | Download | 0.243 | a.118.8 | TPR-like |
| View | Download | 0.242 | a.133.1 | Phospholipase A2, PLA2 |
| View | Download | 0.239 | a.23.2 | Diol dehydratase, gamma subunit |
| View | Download | 0.224 | b.82.4 | Regulatory protein AraC |
| View | Download | 0.216 | a.69.2 | Ypt/Rab-GAP domain of gyp1p |
| View | Download | 0.214 | c.95.1 | Thiolase-like |
| View | Download | 0.212 | a.29.4 | RecG, N-terminal domain |
| View | Download | 0.210 | a.26.1 | 4-helical cytokines |
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Region A: Residues: [841-1196] |
1 11 21 31 41 51
| | | | | |
1 LSDTKYSAIG NKVFTLKLFT NKLRSIAPDV PRDELAESFT EKTMKLFFYL IASGGELISE 60
61 FNKEFYPTPS NYQTKLRCVA GIQVLKLARI SNLNNFIKPS DIIKLINLVE DESLPVRKTF 120
121 LEQLKDYVAN ELISIKFLPL VFFTAYEPDV ELKTTTKIWI NFTFGLKSFK KGTIFERALP 180
181 RLIHAIAHHP DIVGGLDSEG DAYLNALTTA IDYLLFYFDS IAAQENFSLL YYLSERVKNY 240
241 QDKLVEDEID EEEGPQKEEA PKKHRPYGQK MYIIGELSQM ILLNLKEKKN WQHSAYPGKL 300
301 NLPSDLFKPF ATVQEAQLSF KTYIPESLTE KIQNNIKAKI GRILHTSQTQ RQRLQK
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [1197-1277] |
1 11 21 31 41 51
| | | | | |
1 RLLAHENNES QKKKKKVHHA RSQADDEEGD GDRESDSDDD SYSPSNKNET KKGHENIVMK 60
61 KLRVRKEVDY KDDEDDDIEM T
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.442 | d.58.17 | Metal-binding domain |
| View | Download | 0.316 | d.58.3 | Protease propeptides/inhibitors |
| View | Download | 0.304 | d.45.1 | ClpS-like |
| View | Download | 0.362 | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.442 | d.58.17 | Metal-binding domain |
| View | Download | 0.362 | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.316 | d.58.3 | Protease propeptides/inhibitors |
| View | Download | 0.304 | d.45.1 | ClpS-like |
| View | Download | 0.275 | d.58.17 | Metal-binding domain |
| View | Download | 0.273 | a.60.11 | Hypothetical protein YjbJ |
| View | Download | 0.257 | d.58.7 | RNA-binding domain, RBD |
| View | Download | 0.249 | a.4.1 | Homeodomain-like |
| View | Download | 0.208 | a.4.1 | Homeodomain-like |
| View | Download | 0.207 | a.24.17 | Group V grass pollen allergen |
