YRC Public Data Repository - Protein Structure Prediction

Protein:	YMR074C
Organism:	Saccharomyces cerevisiae
Length:	145 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YMR074C.

Description	E-value	Query Range	Subject Range
gi\|151946232 - gi\|151946232\|gb\|EDN64463.1\| conserved protein [Saccharomyces cerevisiae YJM789] YMW4_YEAST - Uncharacterized protein YMR074C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YMR074C ... gi\|190408305 - gi\|190408305\|gb\|EDV11570.1\| conserved hypothetical protein [Saccharomyces cerevisiae RM11-1a] gi\|207342358 - gi\|207342358\|gb\|EDZ70144.1\| YMR074Cp-like protein [Saccharomyces cerevisiae AWRI1631] YMR074C - Protein with homology to human PDCD5, which is involved in programmed cell death; N-terminal region ...	7.0E-35	[1..134]	[1..134]
gi\|220948088, gi... - gi\|220957334\|gb\|ACL91210.1\| PDCD-5-PA [synthetic construct], gi\|220948088\|gb\|ACL86587.1\| PDCD-5-PA [... PDCD-5-PA - The gene PDCD-5 is referred to in FlyBase by the symbol Dmel\PDCD-5 (CG13072, FBgn0036580). It is a ...	1.0E-22	[2..139]	[3..130]
YF69_SCHPO - Uncharacterized protein C23C4.09c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC23C4... SPAC23C4.09c - DNA-binding TFAR19-related protein	3.0E-22	[1..118]	[1..121]
gi\|60817644, gi\|... - gi\|61360126\|gb\|AAX41815.1\| programmed cell death 5 [synthetic construct], gi\|60817644\|gb\|AAX36432.1\|... gi\|109124213 - gi\|109124213\|ref\|XP_001086491.1\| PREDICTED: similar to programmed cell death 5 [Macaca mulatta] PDCD5 - programmed cell death 5 gi\|55648833 - gi\|55648833\|ref\|XP_512563.1\| PREDICTED: similar to TFAR19 [Pan troglodytes] PDCD5_PONPY - Programmed cell death protein 5 - Pongo pygmaeus (Orangutan) PDCD5_PONAB - Programmed cell death protein 5 OS=Pongo abelii GN=PDCD5 PE=2 SV=3	9.0E-22	[2..141]	[3..124]
PDCD5_MOUSE - Programmed cell death protein 5 OS=Mus musculus GN=Pdcd5 PE=1 SV=3	2.0E-21	[2..143]	[3..126]
Y1087_PYRFU, YA8... - (Q8U1W7) Hypothetical protein PF1087, DNA-binding protein PF1087 OS=Pyrococcus furiosus GN=PF1087 PE... Y1087_PYRFU - DNA-binding protein PF1087 OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN...	2.0E-19	[1..112]	[1..111]
Y1374_SULTO, YD7... - (Q971I0) Hypothetical protein ST1374, DNA-binding protein ST1374 OS=Sulfolobus tokodaii GN=ST1374 PE... Y1374_SULTO - DNA-binding protein ST1374 OS=Sulfolobus tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7) G...	7.0E-19	[1..113]	[4..112]
Y1060_PYRHO - DNA-binding protein PH1060 OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBR... YA60_PYRHO, Y106... - (O58787) Hypothetical protein PH1060, DNA-binding protein PH1060 OS=Pyrococcus horikoshii GN=PH1060 ...	1.0E-18	[1..112]	[4..114]
Y925_PYRAB - DNA-binding protein PYRAB09250 OS=Pyrococcus abyssi GN=PYRAB09250 PE=3 SV=1 Y925_PYRAB - DNA-binding protein PYRAB09250 OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=PYRAB09250 PE=3 SV=1	2.0E-18	[3..112]	[6..114]
Y352_SULSO - DNA-binding protein SSO0352 OS=Sulfolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P... Y352_SULSO - DNA-binding protein SSO0352 OS=Sulfolobus solfataricus GN=SSO0352 PE=3 SV=1 gi\|241768754, gi... - gi\|241768754\|ref\|ZP_04766178.1\| DNA-binding TFAR19-related protein [Sulfolobus solfataricus 98/2], g...	1.0E-17	[2..113]	[9..112]

Back

Predicted Domain #1

Region A:
Residues: [1-145]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDPELQAIRE ARLAQLKNNS GGTNGDRNSG ANNGGGENSA PVGAAIANFL EPQALERLSR  60
   61 VALVRRDRAQ AVETYLKKLI ATNNVTHKIT EAEIVSILNG IAKQQNSQNN SKIIFERKDF 120
  121 SEDLNSFDKQ NAKNDDDEDD DDFFD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	13.69897
Match:	1eijA_
Description:	Hypothetical protein MTH1615
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits