| Protein: | BUB2 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 306 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for BUB2.
| Description | E-value | Query Range |
Subject Range |
|
|
4.0E-57 | [4..300] | [127..425] |
|
|
1.0E-55 | [7..286] | [48..315] |
|
|
3.0E-54 | [1..306] | [1..306] |
|
Region A: Residues: [1-172] |
1 11 21 31 41 51
| | | | | |
1 MTSIEDLISN PPLLLHSSLS QLRYLILSEG LPISEDKQQQ RTRCYVWTVL SQTSMEASTQ 60
61 RYLALLKLGP PSTTIYQKIK NDTSRTFQTD PNFRNRVSED ALIRCLSCFA WQTQQRRQKT 120
121 RFGRIPVSTY VQGMNVLLAP LLYSCPSEPM AYQLFTKLCY EMIPTYLTKN LN
|
|
Region B: Residues: [226-234] |
1 11 21 31 41 51
| | | | | |
1 KLWDFMFAY
|
| Detection Method: |  |
| Confidence: | 33.0 |
| Match: | 1fkmA_ |
| Description: | Ypt/Rab-GAP domain of gyp1p |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [173-225] |
1 11 21 31 41 51
| | | | | |
1 GAQNGAKLLD ISLRIIDPKL SKFLSDNLLT AEIYGMPSIL TLSSCNKPLD QVI
|
| Detection Method: | |
| Confidence: | 33.0 |
| Match: | 1fkmA_ |
| Description: | Ypt/Rab-GAP domain of gyp1p |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [235-306] |
1 11 21 31 41 51
| | | | | |
1 GFHMNILFVV AFLVKMRSKV FKSDSPVNLL RQFPDFDADE IIRLGVGFIA KIPAQIYDLL 60
61 VDHLTDPDIY IP
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.508 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.428 | a.35.1 | lambda repressor-like DNA-binding domains |
| View | Download | 0.437 | a.16.1 | S15/NS1 RNA-binding domain |
| View | Download | 0.396 | a.65.1 | Annexin |
| View | Download | 0.394 | a.4.9 | Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 |
| View | Download | 0.392 | a.4.1 | Homeodomain-like |
| View | Download | 0.385 | a.4.1 | Homeodomain-like |
| View | Download | 0.348 | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
| View | Download | 0.343 | a.4.6 | C-terminal effector domain of the bipartite response regulators |
| View | Download | 0.320 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.319 | a.4.6 | C-terminal effector domain of the bipartite response regulators |
| View | Download | 0.312 | a.100.1 | 6-phosphogluconate dehydrogenase C-terminal domain-like |
| View | Download | 0.311 | a.118.1 | ARM repeat |
| View | Download | 0.304 | a.4.1 | Homeodomain-like |
| View | Download | 0.303 | a.21.1 | HMG-box |
| View | Download | 0.293 | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.288 | a.64.1 | Saposin |
| View | Download | 0.286 | a.12.1 | Kix domain of CBP (creb binding protein) |
| View | Download | 0.281 | a.46.2 | Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain |
| View | Download | 0.279 | a.4.6 | C-terminal effector domain of the bipartite response regulators |
| View | Download | 0.273 | a.77.1 | DEATH domain |
| View | Download | 0.266 | a.138.1 | Multiheme cytochromes |
| View | Download | 0.263 | a.4.1 | Homeodomain-like |
| View | Download | 0.262 | a.76.1 | Iron-dependent represor protein, dimerization domain |
| View | Download | 0.243 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.242 | a.77.1 | DEATH domain |
| View | Download | 0.241 | a.151.1 | Glutamyl tRNA-reductase dimerization domain |
| View | Download | 0.235 | a.51.1 | Cytochrome c oxidase subunit h |
| View | Download | 0.229 | d.78.1 | RPB5-like RNA polymerase subunit |
| View | Download | 0.229 | a.58.1 | Chemotaxis receptor methyltransferase CheR, N-terminal domain |
| View | Download | 0.225 | i.1.1 | Ribosome and ribosomal fragments |
| View | Download | 0.225 | a.37.1 | A DNA-binding domain in eukaryotic transcription factors |
| View | Download | 0.224 | a.4.12 | TrpR-like |
| View | Download | 0.222 | a.21.1 | HMG-box |
| View | Download | 0.222 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.216 | a.11.1 | Acyl-CoA binding protein |
| View | Download | 0.214 | a.4.13 | Sigma3 and sigma4 domains of RNA polymerase sigma factors |
| View | Download | 0.209 | a.5.1 | DNA helicase RuvA subunit, C-terminal domain |
| View | Download | 0.202 | a.64.1 | Saposin |
| View | Download | 0.200 | a.23.4 | Mitochondrial import receptor subunit Tom20 |
