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View Structure Prediction Details

Protein: STV1
Organism: Saccharomyces cerevisiae
Length: 890 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for STV1.

Description E-value Query
Range
Subject
Range
gi|19577376 - gi|19577376|emb|CAD27758.1| putative V-ATPase [Anopheles gambiae]
0.0 [7..890] [4..843]
STV1 - Subunit a of the vacuolar-ATPase V0 domain, one of two isoforms (Stv1p and Vph1p); Stv1p is located ...
STV1_YEAST - V-type proton ATPase subunit a, Golgi isoform OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288...
0.0 [1..890] [1..890]
VPP2_MOUSE - V-type proton ATPase 116 kDa subunit a isoform 2 OS=Mus musculus GN=Atp6v0a2 PE=1 SV=2
0.0 [6..882] [3..839]
unc-32 - TJ6\/proton pump status:Confirmed UniProt:P30628 protein_id:CAD30451.1
0.0 [4..889] [13..889]
VPP2_BOVIN - V-type proton ATPase 116 kDa subunit a isoform 2 OS=Bos taurus GN=ATP6V0A2 PE=2 SV=1
0.0 [6..887] [3..844]
ATP6V0A4 - ATPase, H+ transporting, lysosomal V0 subunit a4
0.0 [6..890] [3..835]

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Predicted Domain #1
Region A:
Residues: [1-80]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNQEEAIFRS ADMTYVQLYI PLEVIREVTF LLGKMSVFMV MDLNKDLTAF QRGYVNQLRR  60
   61 FDEVERMVGF LNEVVEKHAA 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.814 0.459 vacuolar acidification a.39.1 EF-hand

Predicted Domain #2
Region A:
Residues: [81-408]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ETWKYILHID DEGNDIAQPD MADLINTMEP LSLENVNDMV KEITDCESRA RQLDESLDSL  60
   61 RSKLNDLLEQ RQVIFECSKF IEVNPGIAGR ATNPEIEQEE RDVDEFRMTP DDISETLSDA 120
  121 FSFDDETPQD RGALGNDLTR NQSVEDLSFL EQGYQHRYMI TGSIRRTKVD ILNRILWRLL 180
  181 RGNLIFQNFP IEEPLLEGKE KVEKDCFIIF THGETLLKKV KRVIDSLNGK IVSLNTRSSE 240
  241 LVDTLNRQID DLQRILDTTE QTLHTELLVI HDQLPVWSAM TKREKYVYTT LNKFQQESQG 300
  301 LIAEGWVPST ELIHLQDSLK DYIETLGS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 22.221849
Match: 1i84S_
Description: Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [409-890]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EYSTVFNVIL TNKLPPTYHR TNKFTQAFQS IVDAYGIATY KEINAGLATV VTFPFMFAIM  60
   61 FGDMGHGFIL FLMALFLVLN ERKFGAMHRD EIFDMAFTGR YVLLLMGAFS VYTGLLYNDI 120
  121 FSKSMTIFKS GWQWPSTFRK GESIEAKKTG VYPFGLDFAW HGTDNGLLFS NSYKMKLSIL 180
  181 MGYAHMTYSF MFSYINYRAK NSKVDIIGNF IPGLVFMQSI FGYLSWAIVY KWSKDWIKDD 240
  241 KPAPGLLNML INMFLAPGTI DDQLYSGQAK LQVVLLLAAL VCVPWLLLYK PLTLRRLNKN 300
  301 GGGGRPHGYQ SVGNIEHEEQ IAQQRHSAEG FQGMIISDVA SVADSINESV GGGEQGPFNF 360
  361 GDVMIHQVIH TIEFCLNCIS HTASYLRLWA LSLAHAQLSS VLWDMTISNA FSSKNSGSPL 420
  421 AVMKVVFLFA MWFVLTVCIL VFMEGTSAML HALRLHWVEA MSKFFEGEGY AYEPFSFRAI 480
  481 IE

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle