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View Structure Prediction Details

Protein: YMR034C
Organism: Saccharomyces cerevisiae
Length: 434 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YMR034C.

Description E-value Query
Range
Subject
Range
gi|207342413 - gi|207342413|gb|EDZ70187.1| YMR034Cp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|190408271 - gi|190408271|gb|EDV11536.1| conserved hypothetical protein [Saccharomyces cerevisiae RM11-1a]
YMR034C - Putative transporter, member of the SLC10 carrier family; identified in a transposon mutagenesis scr...
YMS4_YEAST - Uncharacterized membrane protein YMR034C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN...
0.0 [1..434] [1..434]
gi|1799824 - dbj|BAA16281.1| similar to [SwissProt Accession Number P39836]~start codon is not identified yet [Es...
1.0E-63 [16..400] [8..340]
gi|13362752, gi|... - gi|15832536|ref|NP_311309.1| putative cytochrome oxidase [Escherichia coli O157:H7 str. Sakai], gi|1...
gi|110642593, gi... - gi|110642593|ref|YP_670323.1| hypothetical protein ECP_2433 [Escherichia coli 536], gi|110344185|gb|...
gi|189354247, gi... - gi|189354247|gb|EDU72666.1| transporter, bile acid/Na+ symporter family [Escherichia coli O157:H7 st...
gi|91211746, gi|... - gi|91211746|ref|YP_541732.1| putative cytochrome oxidase [Escherichia coli UTI89], gi|91073320|gb|AB...
gi|227887455, gi... - gi|227887455|ref|ZP_04005260.1| bile acid/Na+ symporter family transporter [Escherichia coli 83972],...
gi|226901298, gi... - gi|237704932|ref|ZP_04535413.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi|22690...
gi|254593763, gi... - gi|254794363|ref|YP_003079200.1| predicted inner membrane protein [Escherichia coli O157:H7 str. TW1...
gi|25497914, gi|... - pir||D85883 probable cytochrome oxidase yfeH [imported] - Escherichia coli (strain O157:H7, substrai...
gi|218428111, gi... - gi|218690547|ref|YP_002398759.1| putative sodium/bile acid symporter family (mazG-like) [Escherichia...
gi|218366126, gi... - gi|218559357|ref|YP_002392270.1| putative sodium/bile acid symporter family (mazG-like) [Escherichia...
gi|13362752, gi|... - gi|15832536|ref|NP_311309.1| putative cytochrome oxidase [Escherichia coli O157:H7], gi|13362752|dbj...
gi|26248785, gi|... - gi|26248785|ref|NP_754825.1| hypothetical protein c2943 [Escherichia coli CFT073], gi|26109191|gb|AA...
gi|117624618, gi... - gi|117624618|ref|YP_853531.1| putative cytochrome oxidase [Escherichia coli APEC O1], gi|115513742|g...
gi|74312945, gi|... - gi|74312945|ref|YP_311364.1| putative cytochrome oxidase [Shigella sonnei Ss046], gi|73856422|gb|AAZ...
gi|15802942, gi|... - gi|15802942|ref|NP_288971.1| putative cytochrome oxidase [Escherichia coli O157:H7 EDL933], gi|12516...
gi|191174594, gi... - gi|75235883|ref|ZP_00720028.1| COG0385: Predicted Na+-dependent transporter [Escherichia coli F11], ...
gi|195938755 - gi|195938755|ref|ZP_03084137.1| putative cytochrome oxidase [Escherichia coli O157:H7 str. EC4024]
gi|168790575, gi... - gi|189369989|gb|EDU88405.1| transporter, bile acid/Na+ symporter family [Escherichia coli O157:H7 st...
gi|208818912, gi... - gi|208818912|ref|ZP_03259232.1| sodium:bile acid symporter family protein [Escherichia coli O157:H7 ...
gi|208813109, gi... - gi|208813109|ref|ZP_03254438.1| sodium:bile acid symporter family protein [Escherichia coli O157:H7 ...
gi|215265736, gi... - gi|215487664|ref|YP_002330095.1| predicted inner membrane protein [Escherichia coli O127:H6 str. E23...
gi|209159093, gi... - gi|209397693|ref|YP_002271888.1| sodium:bile acid symporter family protein [Escherichia coli O157:H7...
gi|218554942, gi... - gi|218554942|ref|YP_002387855.1| putative sodium/bile acid symporter family (mazG-like) [Escherichia...
gi|217319409, gi... - gi|217327042|ref|ZP_03443125.1| sodium:bile acid symporter family protein [Escherichia coli O157:H7 ...
4.0E-63 [23..400] [8..332]
gi|85675394, gi|... - gi|89109223|ref|AP_003003.1| predicted inner membrane protein [Escherichia coli str. K-12 substr. W3...
gi|188491160, gi... - gi|75515752|ref|ZP_00737887.1| COG0385: Predicted Na+-dependent transporter [Escherichia coli 53638]...
gi|124532544, gi... - gi|124532544|ref|ZP_01702252.1| Bile acid:sodium symporter [Escherichia coli B], gi|124498003|gb|EAY...
gi|75196422, gi|... - gi|75196422|ref|ZP_00706492.1| COG0385: Predicted Na+-dependent transporter [Escherichia coli HS], g...
YFEH_ECOLI - Hypothetical protein yfeH - Escherichia coli
gi|238901572, gi... - gi|238901572|ref|YP_002927368.1| putative inner membrane protein [Escherichia coli BW2952], gi|23886...
gi|242378016, gi... - gi|251785743|ref|YP_003000047.1| hypothetical protein B21_02270 [Escherichia coli BL21], gi|24237801...
gi|253978460, gi... - gi|254289153|ref|YP_003054901.1| predicted inner membrane protein [Escherichia coli BL21(DE3)], gi|2...
EG12376 - putative inorganic ion transporter / Predicted inorganic ion transporter; required for swarming phen...
gi|254162392, gi... - gi|254162392|ref|YP_003045500.1| predicted inner membrane protein [Escherichia coli B str. REL606], ...
EG12376 - putative inorganic ion transporter / Predicted inorganic ion transporter; required for swarming phen...
gi|169889853, gi... - gi|170082018|ref|YP_001731338.1| inner membrane protein [Escherichia coli str. K-12 substr. DH10B], ...
gi|170019308, gi... - gi|170019308|ref|YP_001724262.1| bile acid:sodium symporter [Escherichia coli ATCC 8739], gi|1697542...
4.0E-63 [23..400] [8..332]
gi|13475660, gi|... - gi|14026416|dbj|BAB53013.1| mlr6784 [Mesorhizobium loti MAFF303099], gi|13475660|ref|NP_107227.1| hy...
9.0E-61 [11..400] [9..347]
gi|16420964, gi|... - gi|16765745|ref|NP_461360.1| putative Na+-dependent transporter [Salmonella typhimurium LT2], gi|164...
2.0E-60 [23..400] [8..332]
gi|16761345 - gi|16761345|ref|NP_456962.1| hypothetical protein STY2661 [Salmonella enterica subsp. enterica serov...
gi|213583652 - gi|213583652|ref|ZP_03365478.1| hypothetical protein SentesTyph_21510 [Salmonella enterica subsp. en...
gi|213160909 - gi|213160909|ref|ZP_03346619.1| hypothetical protein Salmoneentericaenterica_13003 [Salmonella enter...
lcl|NC_016856.1_... - [gene=yfeH] [protein=putative Na+-dependent transporter] [protein_id=YP_005238508.1] [location=25893...
gi|14970757 - gi|14970757|emb|CAC44464.1| CtsX protein [Salmonella typhimurium]
gi|204929604, gi... - gi|204929604|ref|ZP_03220678.1| transporter, bile acid/Na+ symporter family [Salmonella enterica sub...
gi|29136584, gi|... - gi|29140959|ref|NP_804301.1| hypothetical protein t0432 [Salmonella enterica subsp. enterica serovar...
gi|200386597, gi... - gi|200386597|ref|ZP_03213209.1| transporter, bile acid/Na+ symporter family [Salmonella enterica sub...
gi|213650854 - gi|213650854|ref|ZP_03380907.1| hypothetical protein SentesTy_28673 [Salmonella enterica subsp. ente...
gi|195630740, gi... - gi|195630740|gb|EDX49332.1| transporter, bile acid/Na+ symporter family [Salmonella enterica subsp. ...
gi|168261545, gi... - gi|205349409|gb|EDZ36040.1| transporter, bile acid/Na+ symporter family [Salmonella enterica subsp. ...
gi|197288315, gi... - gi|197288315|gb|EDY27696.1| sodium:bile acid symporter family protein [Salmonella enterica subsp. en...
gi|205329934, gi... - gi|205329934|gb|EDZ16698.1| transporter, bile acid/Na+ symporter family [Salmonella enterica subsp. ...
gi|197262630, gi... - gi|197262630|ref|ZP_03162704.1| transporter, bile acid/Na+ symporter family [Salmonella enterica sub...
gi|197214060, gi... - gi|197250357|ref|YP_002147378.1| transporter, bile acid/Na+ symporter family [Salmonella enterica su...
gi|194711961, gi... - gi|194736459|ref|YP_002115491.1| transporter, bile acid/Na+ symporter family [Salmonella enterica su...
gi|205344834, gi... - gi|205344834|gb|EDZ31598.1| transporter, bile acid/Na+ symporter family [Salmonella enterica subsp. ...
tr|Q8ZN91|Q8ZN91... - Putative Na+-dependent transporter OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) G...
gi|14970757|emb|... - CtsX protein [Salmonella typhimurium]
gi|25512992, gi|... - gi|25512992|pir||AG0809 probable membrane protein STY2661 [imported] - Salmonella enterica subsp. en...
2.0E-60 [23..400] [8..332]
gi|17429559 - gi|17429559|emb|CAD16245.1| putative na+-dependent transporter transmembrane protein [Ralstonia sola...
gi|17547257 - gi|17547257|ref|NP_520659.1| lipoprotein transmembrane [Ralstonia solanacearum GMI1000]
2.0E-58 [9..403] [17..356]
Y2026_PSEAE - Uncharacterized protein PA2026 OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / ...
gi|126193841, gi... - gi|254240463|ref|ZP_04933785.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192], gi|194...
Y2026_PSEAE, YK2... - (P39879) Hypothetical protein PA2026, Uncharacterized protein PA2026 OS=Pseudomonas aeruginosa GN=PA...
gi|218892018, gi... - gi|218892018|ref|YP_002440885.1| putative transporter, bile acid/Na+ symporter family [Pseudomonas a...
4.0E-58 [19..381] [5..314]
gi|13423063, gi|... - gi|16125903|ref|NP_420467.1| symporter [Caulobacter crescentus CB15], gi|13423063|gb|AAK23635.1| sym...
gi|221234666, gi... - gi|221234666|ref|YP_002517102.1| transporter, Sodium/bile acid symporter family [Caulobacter crescen...
gi|25400178 - pir||G87454 symporter [imported] - Caulobacter crescentus
3.0E-57 [14..393] [13..337]

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Predicted Domain #1
Region A:
Residues: [1-352]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKTQYSLIRK IWAHSVTEFL KSQWFFICLA ILIVIARFAP NFARDGGLIK GQYSIGYGCV  60
   61 AWIFLQSGLG MKSRSLMANM LNWRAHATIL VLSFLITSSI VYGFCCAVKA ANDPKIDDWV 120
  121 LIGLILTATC PTTVASNVIM TTNAGGNSLL CVCEVFIGNL LGAFITPALV QMFTNRAPFA 180
  181 YGNPATGNGI GALYGRVMKQ VGLSVFVPLF VGQVIQNCFP KGTAYYLGFL KKYHIKIGSY 240
  241 MLLLIMFSSF STAFYQDAFT SVSHVCIIFL CFFNLGIYIF FTGLSYLCAR PWFILKLFPH 300
  301 EPIEGKSTRL YRYSYNIFRP FYYSKEDAIC IMFCGPAKTA ALGVSLITSQ YG

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [353-434]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DKKEHLGKLL VPLVLYQVEQ VMTANFFVSL FKRWIQKDAQ ADGSESSCAN ENEEVDLEKI  60
   61 ISIGTGENQS VLSNNVPYTQ PR

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [320-434]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PFYYSKEDAI CIMFCGPAKT AALGVSLITS QYGDKKEHLG KLLVPLVLYQ VEQVMTANFF  60
   61 VSLFKRWIQK DAQADGSESS CANENEEVDL EKIISIGTGE NQSVLSNNVP YTQPR

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle