YRC Public Data Repository - Protein Structure Prediction

Protein:	YMR010W
Organism:	Saccharomyces cerevisiae
Length:	405 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YMR010W.

Description	E-value	Query Range	Subject Range
YMR010W - Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to th... YMP0_YEAST - Uncharacterized membrane protein YMR010W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN...	0.0	[1..405]	[1..405]
gi\|12858638, gi\|... - gi\|21313218\|ref\|NP_080137.1\| PQ loop repeat containing 1 [Mus musculus], gi\|12858638\|dbj\|BAB31391.1\|...	3.0E-78	[38..353]	[6..270]
gi\|4006887, gi\|4... - gi\|7270634\|emb\|CAB80351.1\| putative protein [Arabidopsis thaliana], gi\|42567473\|ref\|NP_568009.2\| PQ-...	2.0E-73	[49..337]	[33..348]
STM1_SCHPO - Seven transmembrane protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=stm1 PE=1 SV... stm1 - G-protein coupled receptor Stm1	8.0E-48	[45..339]	[14..271]

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Predicted Domain #1

Region A:
Residues: [1-167]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTTGPLDAT LIRDVAVATA TKASYDMSDT LYSYLPKVDQ FYIPEWLTMQ FIANNLISFT  60
   61 PLFSYGTTII SIEKCKTALG FSIDICATML IASILRISYY LITPYEITLL RQSLVMIFIQ 120
  121 LILLRTSLKY RPDEYKYQNL TDVESLSHLI HDIWFEFFSC INRPKFL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.896	N/A	N/A	a.24.9	alpha-catenin/vinculin

Predicted Domain #2

Region A:
Residues: [168-243]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SEDWKNLIKS LSFTNLLKFS FKIFLAFFYK ILKFFDPNFK RIGAFWQWDD DKNFWRFLAL  60
   61 FATVQILVTF FISNIL

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [244-405]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NWDSLAQGLG SIIGSLGLLV ESLLPLPQIA ILYKLKSVQG FKLILLVSWL CGDTLKITYL  60
   61 IFGAKNISAL FVIFALFQMS LDFYIGGQYI YYRYYYPKLR HQHHPNDSNS PSDEDESEMY 120
  121 ELDLFNTLQK DVEKALKQDS NDTSDSPQDD QVGKSQAQAV TL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits