Protein: | MSC1 |
Organism: | Saccharomyces cerevisiae |
Length: | 513 amino acids |
Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MSC1.
Description | E-value | Query Range |
Subject Range |
|
0.0 | [1..513] | [1..513] |
|
1.0E-40 | [21..299] | [1316..1610] |
|
1.0E-30 | [18..336] | [755..1032] |
|
5.0E-29 | [53..319] | [51..295] |
|
1.0E-28 | [48..330] | [934..1208] |
Region A: Residues: [1-395] |
1 11 21 31 41 51 | | | | | | 1 MKQFKLVNAV SASFVLIGLV LANSDSVFDK WTQEDLADYL RDNKKSLEKY ATDSIEDLKT 60 61 EASQVWDKHA QPKPWWQVWS SDSSSVSNSN PGWFGYTGSS DHPVSDWLFD TWSTDSLRNF 120 121 LKKNGVDVDD AKASKDSLVK TAKENFNKIS KSLKSSGYYP SSSYFDSWST KDLQNWLNDN 180 181 GIDYDKAVQS KDELVQKVKE NIYRTSEKAE QQRLGLLESL DLAHQQILDT SGQIKDTVFD 240 241 KWSSDQLTNW LESHKVNIDK NMAKKHDYLV RMAKENSANL KDDIYWYLDY MKRESSPFLT 300 301 KTPEYVGSVW DSSKNFLTNL YSKFRGKTDN VINDTFLVGL DSWPKDKLKM FLDARGIKYS 360 361 MLSTEHQLRE LVKKSRNEKL KILPKDYQKY FDNSN |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
Region A: Residues: [396-513] |
1 11 21 31 41 51 | | | | | | 1 WSLDDIKGWF ADKKDDFQDS QTYSTIMQDF DKVSKNTNDA KDQIAKTWSN TFQSWSQEDL 60 61 LQYLKSFGVP VKQTSTKDDL INLAKQNTQW LFGTVKEPAY KRYLHNVKNW SKSILGFN |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
MCM Score |
SCOP Match |
SCOP Description | ||
View | Download | 0.611 | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
View | Download | 0.318 | a.118.9 | ENTH/VHS domain |
View | Download | 0.429 | a.118.12 | Ran-GTPase activating protein 1 (RanGAP1), C-terminal domain |
View | Download | 0.321 | a.118.13 | Arp2/3 complex 16 kDa subunit ARPC5 |
View | Download | 0.308 | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
View | Download | 0.233 | a.1.1 | Globin-like |
View | Download | 0.231 | a.4.6 | C-terminal effector domain of the bipartite response regulators |
View | Download | 0.229 | d.199.1 | DNA-binding C-terminal domain of the transcription factor MotA |
View | Download | 0.222 | a.1.1 | Globin-like |
View | Download | 0.213 | a.118.13 | Arp2/3 complex 16 kDa subunit ARPC5 |
View | Download | 0.207 | a.118.8 | TPR-like |
Region A: Residues: [330-513] |
1 11 21 31 41 51 | | | | | | 1 NVINDTFLVG LDSWPKDKLK MFLDARGIKY SMLSTEHQLR ELVKKSRNEK LKILPKDYQK 60 61 YFDNSNWSLD DIKGWFADKK DDFQDSQTYS TIMQDFDKVS KNTNDAKDQI AKTWSNTFQS 120 121 WSQEDLLQYL KSFGVPVKQT STKDDLINLA KQNTQWLFGT VKEPAYKRYL HNVKNWSKSI 180 181 LGFN |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
MCM Score |
SCOP Match |
SCOP Description | ||
View | Download | 0.611 | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
View | Download | 0.429 | a.118.12 | Ran-GTPase activating protein 1 (RanGAP1), C-terminal domain |
View | Download | 0.321 | a.118.13 | Arp2/3 complex 16 kDa subunit ARPC5 |
View | Download | 0.318 | a.118.9 | ENTH/VHS domain |
View | Download | 0.308 | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |