YRC Public Data Repository - Protein Structure Prediction

Protein:	GTR1
Organism:	Saccharomyces cerevisiae
Length:	310 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GTR1.

Description	E-value	Query Range	Subject Range
gi\|109111463 - gi\|109111463\|ref\|XP_001101910.1\| PREDICTED: similar to Ras-related GTP-binding protein ragA [Macaca ...	329.0	[0..6]	[310..201]
gi\|114623963 - gi\|114623963\|ref\|XP_528488.2\| PREDICTED: similar to Rraga protein [Pan troglodytes]	329.0	[0..6]	[310..278]
gi\|22902383 - gi\|22902383\|gb\|AAH37615.1\| Rraga protein [Mus musculus]	322.0	[0..6]	[310..78]
gi\|73971690 - gi\|73971690\|ref\|XP_531945.2\| PREDICTED: similar to Ras-related GTP-binding protein ragA [Canis famil...	321.0	[0..6]	[310..105]
gi\|76663301 - gi\|76663301\|ref\|XP_584196.2\| PREDICTED: similar to Ras-related GTP-binding protein ragA [Bos taurus]	315.0	[0..6]	[310..52]
gi\|119613635, gi... - gi\|57208760\|emb\|CAI40805.1\| Ras-related GTP binding B [Homo sapiens], gi\|55662161\|emb\|CAH70827.1\| Ra... gi\|190689465, gi... - gi\|190690827\|gb\|ACE87188.1\| Ras-related GTP binding B protein [synthetic construct], gi\|190689465\|gb...	313.0	[0..6]	[310..40]
gi\|47222595 - gi\|47222595\|emb\|CAG02960.1\| unnamed protein product [Tetraodon nigroviridis]	308.0	[0..2]	[310..3]
gi\|50745896 - gi\|50745896\|ref\|XP_420287.1\| PREDICTED: similar to ragA [Gallus gallus]	308.0	[0..2]	[310..3]

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Predicted Domain #1

Region A:
Residues: [1-234]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSNNRKKLL LMGRSGSGKS SMRSIIFSNY SAFDTRRLGA TIDVEHSHLR FLGNMTLNLW  60
   61 DCGGQDVFME NYFTKQKDHI FQMVQVLIHV FDVESTEVLK DIEIFAKALK QLRKYSPDAK 120
  121 IFVLLHKMDL VQLDKREELF QIMMKNLSET SSEFGFPNLI GFPTSIWDES LYKAWSQIVC 180
  181 SLIPNMSNHQ SNLKKFKEIM NALEIILFER TTFLVICSSN GENSNENHDS SDNN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	51.09691
Match:	1g16A
Description:	Rab-related protein Sec4
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [235-310]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NVLLDPKRFE KISNIMKNFK QSCTKLKSGF KTLILNNNIY VSELSSNMVC FIVLKDMNIP  60
   61 QELVLENIKK AKEFFQ

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.678	N/A	N/A	d.110.7	Description not found.
View	Download	0.667	N/A	N/A	d.58.18	Regulatory domain in the aminoacid metabolism
View	Download	0.620	N/A	N/A	d.52.3	Prokaryotic type KH domain (KH-domain type II)
View	Download	0.601	N/A	N/A	d.52.5	Probable GTPase Der, C-terminal domain
View	Download	0.601	N/A	N/A	d.52.5	Probable GTPase Der, C-terminal domain
View	Download	0.601	N/A	N/A	d.141.1	Ribosomal protein L6
View	Download	0.570	N/A	N/A	d.52.5	Probable GTPase Der, C-terminal domain
View	Download	0.570	N/A	N/A	d.52.5	Probable GTPase Der, C-terminal domain
View	Download	0.556	N/A	N/A	a.64.1	Saposin
View	Download	0.555	N/A	N/A	d.58.7	RNA-binding domain, RBD

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits