Protein: | MDM1 |
Organism: | Saccharomyces cerevisiae |
Length: | 1127 amino acids |
Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MDM1.
Description | E-value | Query Range |
Subject Range |
|
0.0 | [1..1127] | [1..1127] |
|
0.0 | [23..1107] | [41..1103] |
|
0.0 | [7..1123] | [7..999] |
|
0.0 | [9..1122] | [60..1004] |
|
0.0 | [4..575] | [81..576] |
Region A: Residues: [1-80] |
1 11 21 31 41 51 | | | | | | 1 MPKFPQFRLI LVLFYLISMI QWSVITFSLG FFLNVCIFAY FVFFKSLPDL PKPQPRFVDI 60 61 VPESSNTVDV DKELKSVEGL |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
Region A: Residues: [81-294] |
1 11 21 31 41 51 | | | | | | 1 IQDGNAQIGK ELESIVNLII KDFVQPWFTK IDKNSDAEFL KVIKWRLLQT LLVVKDKLMK 60 61 NDSASLIVLK LLPIFNKHFS TFCDAREAVL SDLTLERHKS ANIDLQIAVE FNKNYKIHKS 120 121 LSLKPNALQK EIEKSIRKTV IGLLPHLFDN DELDSLLVFT LMTEVLTTCI ISPLIFKFTD 180 181 PDSWNLRIVS LSQNYFEEKH KVHKIRRMLS KELQ |
Detection Method: | |
Confidence: | 97.568636 |
Match: | PF02194 |
Description: | PXA domain |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
Region A: Residues: [295-388] |
1 11 21 31 41 51 | | | | | | 1 DHRKVMNDVA NKDVGEPSSE KLELNAEYTG KQFEHYLNQL DSLLDLSDIK YVAYSLALKI 60 61 YQLKENEHLT KENLKYKKRL LLSLNLIESK LSFP |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
View | Download | 0.906 | 0.010 | mitochondrion inheritance | a.7.6 | Ribosomal protein S20 |
Region A: Residues: [389-607] |
1 11 21 31 41 51 | | | | | | 1 GSEIDTASKK LAREANYPDL NMDNGIVLKE MASFLTSITL KDIVDDSEFL PFFESFLGSV 60 61 PETQGSTFLE YSQTIESFKN PLEDATSEDI ISGYSGISTM QLQEISSKFF HNNNLQNMKL 120 121 LDEGLVKNII LFRNSFQINN DEDTFILARK SVLLLQTEAI KYLDDRFLPL FKKTPSFLKM 180 181 LSTSHIISTD IYAHFLSRIG GVNNPEQNKI IKDNVKTDF |
Detection Method: | |
Confidence: | 12.29 |
Match: | 1agrE |
Description: | Regulator of G-protein signalling 4, RGS4 |
Matching Structure (courtesy of the PDB): |
Term | Confidence | Notes |
binding | 1.74066926539061 | bayes_pls_golite062009 |
protein binding | 1.46874099847386 | bayes_pls_golite062009 |
nucleoside-triphosphatase regulator activity | 0.751540543950607 | bayes_pls_golite062009 |
GTPase regulator activity | 0.726313915060022 | bayes_pls_golite062009 |
enzyme regulator activity | 0.619424511001805 | bayes_pls_golite062009 |
enzyme activator activity | 0.423538625413241 | bayes_pls_golite062009 |
GTPase activator activity | 0.380332469241193 | bayes_pls_golite062009 |
calmodulin binding | 0.144645492942361 | bayes_pls_golite062009 |
Region A: Residues: [608-696] |
1 11 21 31 41 51 | | | | | | 1 MNPVRIFANP GITDALDNIV NGSGSKPHKS RISSNPRYSQ LFGSENDNIF KDKLFDDEND 60 61 NTSEISVVED QLDHPRNMEK VSVSSGNSG |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
View | Download | 0.392 | 0.882 | mitochondrion inheritance | a.39.1 | EF-hand |
Region A: Residues: [697-920] |
1 11 21 31 41 51 | | | | | | 1 LNPSQFYGSN NFRDNIASLT ISIDQIEKEL ELLRHLILKA DLTNNQMQLK ILKKSQRTLL 60 61 KELEMKELLK QQYMVQENGN SLFRKTKIYI RSYFSENSSN GLKEITYYII NIHHFNNGQV 120 121 SSWDMARRYN EFFELNTYLK KNFRDLMRQL QDLFPSKVKM SLKYHVTKTL LYEERKQKLE 180 181 KYLRELLSIS EICEDNIFRR FLTDPTPFKL NKEYMHDDIL EEPL |
Detection Method: | |
Confidence: | 22.154902 |
Match: | 1h6hA_ |
Description: | p40phox NADPH oxidase |
Matching Structure (courtesy of the PDB): |
Region A: Residues: [921-1127] |
1 11 21 31 41 51 | | | | | | 1 HEPIGSSNST SNSSSVVDLQ SSEDGGELNF YEDERHFFTD SGYPFYSQNK SFVKQICDLF 60 61 ISLFALNKAN AGWLRGRAII TVLQQLLGST IEKYIKVSIQ KLRSEDQVFE AIVTFKNMLW 120 121 GDNGLFERKR NETAEATRSE GERLRTEQLA LTSLQRLFAD TCGRVVGLRD SHEAAGRVHA 180 181 MLQNPYLNAS LLLEALDAIL LDIICND |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.