YRC Public Data Repository - Protein Structure Prediction

Protein:	RAD10
Organism:	Saccharomyces cerevisiae
Length:	210 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RAD10.

Description	E-value	Query Range	Subject Range
RAD10_YEAST - DNA repair protein RAD10 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RAD10 PE=1 SV=1 gi\|151946071 - gi\|151946071\|gb\|EDN64302.1\| ssDNA endonuclease [Saccharomyces cerevisiae YJM789] gi\|190408151 - gi\|190408151\|gb\|EDV11416.1\| ssDNA endonuclease [Saccharomyces cerevisiae RM11-1a] gi\|207342581 - gi\|207342581\|gb\|EDZ70306.1\| YML095Cp-like protein [Saccharomyces cerevisiae AWRI1631] RAD10 - Single-stranded DNA endonuclease (with Rad1p), cleaves single-stranded DNA during nucleotide excisio...	4.0E-85	[1..210]	[1..210]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	2.0E-65	[43..209]	[54..213]
gi\|61363050, gi\|... - gi\|61363050\|gb\|AAX42326.1\| excision repair cross-complementing rodent repair deficiency complementat... ERCC1 - excision repair cross-complementing rodent repair deficiency, complementation group 1 (includes over...	5.0E-65	[43..209]	[54..213]
ERCC1_MOUSE - DNA excision repair protein ERCC-1 OS=Mus musculus GN=Ercc1 PE=2 SV=2	2.0E-63	[45..209]	[56..213]
gi\|6576543 - gi\|6576543\|dbj\|BAA88319.1\| ERCC1 [Cricetulus griseus]	2.0E-57	[44..209]	[50..208]
ERCC1_ARATH - DNA excision repair protein ERCC-1 OS=Arabidopsis thaliana GN=ERCC1 PE=2 SV=1	6.0E-56	[44..210]	[77..239]
gi\|3297891 - gi\|3297891\|emb\|CAA05781.1\| nucleotide repair protein [Lilium longiflorum]	6.0E-51	[72..210]	[12..146]
gi\|3845112, gi\|1... - gi\|3845112\|gb\|AAC71822.1\| ERCC1 nucleotide excision repair protein, putative [Plasmodium falciparum ... gi\|7494159 - pir\|\|E71621 ERCC1-like excision repair protein PFB0160w - malaria parasite (Plasmodium falciparum)	3.0E-48	[48..210]	[3..161]
Ercc1-PA - The gene Ercc1 is referred to in FlyBase by the symbol Dmel\Ercc1 (CG10215, FBgn0028434). It is a pr...	1.0E-46	[51..209]	[19..176]

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Predicted Domain #1

Region A:
Residues: [1-73]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNNTDPTSFE SILAGVAKLR KEKSGADTTG SQSLEIDASK LQQQEPQTSR RINSNQVINA  60
   61 FNQQKPEEWT DSK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.869	a.112.1	Description not found.

Predicted Domain #2

Region A:
Residues: [74-210]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ATDDYNRKRP FRSTRPGKTV LVNTTQKENP LLNHLKSTNW RYVSSTGINM IYYDYLVRGR  60
   61 SVLFLTLTYH KLYVDYISRR MQPLSRNENN ILIFIVDDNN SEDTLNDITK LCMFNGFTLL 120
  121 LAFNFEQAAK YIEYLNL

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	44.853872
Match:	PF03834
Description:	DNA repair protein rad10

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits