YRC Public Data Repository - Protein Structure Prediction

Protein:	GIM5
Organism:	Saccharomyces cerevisiae
Length:	163 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GIM5.

Description	E-value	Query Range	Subject Range
gi\|7209590, gi\|9... - gi\|9910216\|ref\|NP_064415.1\| prefoldin 5 isoform 1 [Mus musculus], gi\|7209590\|dbj\|BAA92269.1\| EIG-1 [...	3.0E-38	[3..152]	[42..189]
gi\|151946072 - gi\|151946072\|gb\|EDN64303.1\| conserved protein [Saccharomyces cerevisiae YJM789] GIM5 - Subunit of the heterohexameric cochaperone prefoldin complex which binds specifically to cytosolic c... PFD5_YEAST - Prefoldin subunit 5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GIM5 PE=1 SV=1 gi\|190408152 - gi\|190408152\|gb\|EDV11417.1\| prefoldin subunit 5 [Saccharomyces cerevisiae RM11-1a]	4.0E-28	[1..163]	[1..163]
PFD5_SCHPO - Probable prefoldin subunit 5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=bob1 PE=1 SV=... bob1 - prefoldin subunit 5	2.0E-27	[3..140]	[5..143]
gi\|16905198\|gb\|A... - putative c-myc binding protein [Oryza sativa] gi\|37535560, gi\|... - gi\|37535560\|ref\|NP_922082.1\| putative c-myc binding protein [Oryza sativa (japonica cultivar-group)]...	2.0E-26	[2..144]	[3..143]
pfd-5 - status:Confirmed UniProt:Q21993 protein_id:AAK29855.1	2.0E-26	[3..151]	[5..152]
PFD5_ARATH - Probable prefoldin subunit 5 OS=Arabidopsis thaliana GN=At5g23290 PE=2 SV=1	2.0E-25	[2..150]	[4..150]
gi\|24041018, gi\|... - gi\|57208144\|emb\|CAI42447.1\| ubiquitously-expressed transcript [Homo sapiens], gi\|5106779\|gb\|AAD39840...	2.0E-22	[21..144]	[38..161]
gi\|167013372, gi... - gi\|7518689\|pir\|\|B71166 hypothetical protein PH0527 - Pyrococcus horikoshii, gi\|167013372\|pdb\|2ZDI\|C ... gi\|3256932, gi\|1... - gi\|3256932\|dbj\|BAA29615.1\| 151aa long hypothetical protein [Pyrococcus horikoshii OT3], gi\|14590428\|...	4.0E-22	[9..144]	[7..142]
PFDA_PYRHO - Prefoldin subunit alpha OS=Pyrococcus horikoshii GN=pfdA PE=1 SV=2 PFDA_PYRHO - Prefoldin subunit alpha OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 1...	6.0E-22	[9..144]	[4..139]

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Predicted Domain #1

Region A:
Residues: [1-83]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSQKIDLTK LNPEQLNAVK QQFDQELQHF TQSLQALTMA KGKFTECIDD IKTVSQAGNE  60
   61 GQKLLVPASA SLYIPGKIVD NKK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	17.30103
Match:	1fxkC_
Description:	Prefoldin alpha subunit
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [84-163]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FMVDIGTGYY VEKSAEAAIA FYQKKVDKLN KESVQIQDII KEKTQYSLSI EAQIRQAAIR  60
   61 QHEAMSKQQQ QQQKKESSTA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	17.30103
Match:	1fxkC_
Description:	Prefoldin alpha subunit
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits