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View Structure Prediction Details

Protein: TUB1
Organism: Saccharomyces cerevisiae
Length: 447 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TUB1.

Description E-value Query
Range
Subject
Range
gi|157767470 - gi|157767470|ref|XP_001667215.1| Hypothetical protein CBG16137 [Caenorhabditis briggsae AF16]
tbb-4 - tubulin beta chain status:Partially_confirmed UniProt:P41937 protein_id:CAA86310.1
gi|39596183, gi|... - gi|39596183|emb|CAE69820.1| Hypothetical protein CBG16137 [Caenorhabditis briggsae], gi|187026681|em...
0.0 [1..447] [1..436]
gi|17402390 - gi|17402390|emb|CAC82577.1| beta-tubulin [Fasciola hepatica]
0.0 [1..447] [1..436]
gi|2443346 - gi|2443346|dbj|BAA22382.1| beta-tubulin [Halocynthia roretzi]
0.0 [1..441] [1..430]
gi|10242186 - gi|10242186|gb|AAG15328.1|AF255954_1 beta tubulin [Chionodraco rastrospinosus]
gi|10242160 - gi|10242160|gb|AAG15315.1|AF255553_1 beta tubulin [Notothenia coriiceps]
0.0 [1..441] [1..430]
TBB4_XENLA - Tubulin beta-4 chain OS=Xenopus laevis GN=tubb4 PE=2 SV=1
0.0 [1..441] [1..430]
TBB_PARLI - Tubulin beta chain OS=Paracentrotus lividus PE=2 SV=1
0.0 [1..441] [1..430]
gi|19773428, gi|... - gi|19773428|dbj|BAB86853.1| beta-tubulin [Bombyx mori], gi|112983318|ref|NP_001036964.1| beta-tubuli...
0.0 [1..444] [1..433]
TBB1_MANSE - Tubulin beta-1 chain OS=Manduca sexta PE=2 SV=1
0.0 [1..444] [1..433]

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Predicted Domain #1
Region A:
Residues: [1-447]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MREVISINVG QAGCQIGNAC WELYSLEHGI KPDGHLEDGL SKPKGGEEGF STFFHETGYG  60
   61 KFVPRAIYVD LEPNVIDEVR NGPYKDLFHP EQLISGKEDA ANNYARGHYT VGREILGDVL 120
  121 DRIRKLADQC DGLQGFLFTH SLGGGTGSGL GSLLLEELSA EYGKKSKLEF AVYPAPQVST 180
  181 SVVEPYNTVL TTHTTLEHAD CTFMVDNEAI YDMCKRNLDI PRPSFANLNN LIAQVVSSVT 240
  241 ASLRFDGSLN VDLNEFQTNL VPYPRIHFPL VSYSPVLSKS KAFHESNSVS EITNACFEPG 300
  301 NQMVKCDPRD GKYMATCLLY RGDVVTRDVQ RAVEQVKNKK TVQLVDWCPT GFKIGICYEP 360
  361 PTATPNSQLA TVDRAVCMLS NTTSIAEAWK RIDRKFDLMY AKRAFVHWYV GEGMEEGEFT 420
  421 EAREDLAALE RDYIEVGADS YAEEEEF

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 11000.0
Match: 1ffxA_
Description: Tubulin:stathmin-like domain complex
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
structural constituent of cytoskeleton 4.04224160177678 bayes_pls_golite062009
structural molecule activity 3.32779015200848 bayes_pls_golite062009
tubulin binding 2.4432045213385 bayes_pls_golite062009
cytoskeletal protein binding 2.24606230377981 bayes_pls_golite062009
binding 2.00508289492248 bayes_pls_golite062009
GTPase activity 1.87512665946067 bayes_pls_golite062009
nucleoside-triphosphatase activity 1.77500173070686 bayes_pls_golite062009
pyrophosphatase activity 1.7017047947554 bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides 1.68267378160702 bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 1.68038087466376 bayes_pls_golite062009
protein binding 1.60795853516357 bayes_pls_golite062009
MHC class I protein binding 1.46574865275013 bayes_pls_golite062009
gamma-tubulin binding 1.02742779831447 bayes_pls_golite062009
hydrolase activity 0.502038132260603 bayes_pls_golite062009
receptor binding 0.00945891657658993 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle