YRC Public Data Repository - Protein Structure Prediction

Protein:	SMA2
Organism:	Saccharomyces cerevisiae
Length:	369 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SMA2.

Description	E-value	Query Range	Subject Range
SMA2_YEAST - Spore membrane assembly protein 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SMA2 P... SMA2 - Meiosis-specific prospore membrane protein; required to produce bending force necessary for proper a...	0.0	[1..369]	[1..369]

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Predicted Domain #1

Region A:
Residues: [1-369]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLFPKRLIVW GVLLILSLSQ FVLYLPATTC TNSKGLRLCA PQFTITVIGG SSTANEFIAS  60
   61 VREFLRLISY LTIDMGWSNE FTDPSVYEDE NLVDTFQPDK VFELNYFGFC KRSNKSKVYC 120
  121 TSNENYGMDV LEVLVRDVGI QLGNISTTRS NETKKFGDSL VLTYRLALTS IRDFLKHDKH 180
  181 TGNALSKALI GSPDPNVKGV SPTKNYLKGV NLAFILMMFN GMVFYFAVLE IIVGFLSICV 240
  241 VSAFGGALSV GKRHRLFPML LKSSSSILVV IATLTILCNI VYLIALKTLE PEEVTDVGSD 300
  301 NAAVHTTGWE LLKVNVGSGF IMGLARYAIQ WVLLVLAFLA ANHYKAKPKK SDKYTEDTSN 360
  361 SPSPDLMEK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [200-369]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VSPTKNYLKG VNLAFILMMF NGMVFYFAVL EIIVGFLSIC VVSAFGGALS VGKRHRLFPM  60
   61 LLKSSSSILV VIATLTILCN IVYLIALKTL EPEEVTDVGS DNAAVHTTGW ELLKVNVGSG 120
  121 FIMGLARYAI QWVLLVLAFL AANHYKAKPK KSDKYTEDTS NSPSPDLMEK