YRC Public Data Repository - Protein Structure Prediction

Protein:	PRM6
Organism:	Saccharomyces cerevisiae
Length:	352 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PRM6.

Description	E-value	Query Range	Subject Range
gi\|190408198 - gi\|190408198\|gb\|EDV11463.1\| conserved hypothetical protein [Saccharomyces cerevisiae RM11-1a] PRM6 - Pheromone-regulated protein, predicted to have 2 transmembrane segments; regulated by Ste12p during ... PRM6_YEAST - Pheromone-regulated membrane protein 6 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=P... gi\|151946119 - gi\|151946119\|gb\|EDN64350.1\| pheromone-regulated membrane protein [Saccharomyces cerevisiae YJM789]	0.0	[1..352]	[1..352]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	0.0	[15..284]	[26..300]
gi\|16945437 - gi\|16945437\|emb\|CAB91707.2\| conserved hypothetical protein [Neurospora crassa]	1.0E-72	[51..284]	[1..192]

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Predicted Domain #1

Region A:
Residues: [1-352]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESSLQKLKF QDIDINLIPT AKWTTKLQYI LYTWCQSILH VAMFFSDIYT CIKLLAFNTW  60
   61 SNNIIQPFLE FRISKWLFSG CILCSSLILI WELVIGLRVY RKKEITSNYM NGISRLINCL 120
  121 FNFKKYQIFE LIVLTDEKKF SKWLFFSYFE ISGCLRLLFG DSPRQIINGL TLWSVLLTVS 180
  181 NETSSGTHST QSLGNLDDLN GIINKIKHIA KTNYEESVIL SFMLFSFIIW VILISKLILS 240
  241 IIIFIIFIRP RFLSSKRKVK GYELKLRKYV SKVIDENLSR TVYELGILID DEEEGTICGD 300
  301 NKTQKKFDYD SPDYGDESTI PSYYCYSDVE TYERVYTPIK AYFPQKYKHK YI

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits