YRC Public Data Repository - Protein Structure Prediction

Protein:	TAF11
Organism:	Saccharomyces cerevisiae
Length:	346 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TAF11.

Description	E-value	Query Range	Subject Range
gi\|49526314, gi\|... - gi\|50289151\|ref\|XP_447005.1\| unnamed protein product [Candida glabrata], gi\|49526314\|emb\|CAG59938.1\|... gi\|49526314 - gi\|49526314\|emb\|CAG59938.1\| unnamed protein product [Candida glabrata]	319.0	[0..1]	[346..1]
gi\|49640710, gi\|... - gi\|50303273\|ref\|XP_451578.1\| unnamed protein product [Kluyveromyces lactis], gi\|49640710\|emb\|CAH0197... gi\|49640710 - gi\|49640710\|emb\|CAH01971.1\| KLLA0B01067p [Kluyveromyces lactis]	278.0	[0..1]	[346..1]
gi\|44982869, gi\|... - gi\|45188052\|ref\|NP_984275.1\| ADR179Cp [Ashbya gossypii ATCC 10895], gi\|44982869\|gb\|AAS52099.1\| ADR17... gi\|44982869 - gi\|44982869\|gb\|AAS52099.1\| ADR179Cp [Ashbya gossypii ATCC 10895]	276.0	[0..1]	[346..1]
gi\|114599058 - gi\|114599058\|ref\|XP_526843.2\| PREDICTED: hypothetical protein [Pan troglodytes]	176.0	[0..92]	[194..51]
gi\|113416505, gi... - gi\|41147164\|ref\|XP_373076.1\| PREDICTED: similar to TAF11 RNA polymerase II, TATA box binding protein...	175.0	[0..92]	[194..119]

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Predicted Domain #1

Region A:
Residues: [1-113]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTEPQGPLDT IPKVNYPPIL TIANYFSTKQ MIDQVISEDQ DYVTWKLQNL RTGGTSINNQ  60
   61 LNKYPKYKYQ KTRINQQDPD SINKVPENLI FPQDILQQQT QNSNYEDTNT NED

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [114-238]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ENEKLAQDEQ FKLLVTNLDK DQTNRFEVFH RTSLNKTQVK KLASTVANQT ISENIRVFLQ  60
   61 AVGKIYAGEI IELAMIVKNK WLTSQMCIEF DKRTKIGYKL KKYLKKLTFS IIENQQYKQD 120
  121 YQSDS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	100.0
Match:	1bh8B
Description:	TAF(II)28
Matching Structure (courtesy of the PDB):

Predicted Domain #3

Region A:
Residues: [239-346]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VPEDEPDFYF DDEEVDKRET TLGNSLLQSK SLQQSDHNSQ DLKLQLIEQY NKLVLQFNKL  60
   61 DVSIEKYNNS PLLPEHIREA WRLYRLQSDT LPNAYWRTQG EGQGSMFR

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.804	a.45.1	Glutathione S-transferase (GST), C-terminal domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits