YRC Public Data Repository - Protein Structure Prediction

Protein:	RAD33
Organism:	Saccharomyces cerevisiae
Length:	177 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RAD33.

Description	E-value	Query Range	Subject Range
RAD33 - Protein involved in nucleotide excision repair; green fluorescent protein (GFP)-fusion protein local... gi\|207342471 - gi\|207342471\|gb\|EDZ70228.1\| YML011Cp-like protein [Saccharomyces cerevisiae AWRI1631] gi\|190408228 - gi\|190408228\|gb\|EDV11493.1\| conserved hypothetical protein [Saccharomyces cerevisiae RM11-1a] RAD33_YEAST - DNA repair protein RAD33 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RAD33 PE=1 SV=1	0.0	[1..177]	[1..177]

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Predicted Domain #1

Region A:
Residues: [1-177]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKSTNVSYE RVELFENPKV PIEVEDEILE KYAESSLDHD MTVNELPRFF KDLQLEPTIW  60
   61 KLVRNEDVII EGTDVIDFTK LVRCTCQLLI LMNNLTVIDD LWSMLIRNCG RDVDFPQVAL 120
  121 RDHVLSVKDL QKISNLIGAD QSSGTIEMIS CATDGKRLFM TYLDFGCVLG KLGYLKM

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits