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View Structure Prediction Details

Protein: MRPL39
Organism: Saccharomyces cerevisiae
Length: 70 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MRPL39.

Description E-value Query
Range
Subject
Range
gi|190408230 - gi|190408230|gb|EDV11495.1| mitochondrial 60S ribosomal protein L39 [Saccharomyces cerevisiae RM11-1...
gi|151946152 - gi|151946152|gb|EDN64383.1| YmL39 [Saccharomyces cerevisiae YJM789]
RM39_YEAST - 54S ribosomal protein L39, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN...
MRPL39 - Mitochondrial ribosomal protein of the large subunit
ORFP:17370 - YML009C, Contig c188 3495-3707
7.0E-21 [1..70] [1..70]

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Predicted Domain #1
Region A:
Residues: [1-70]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVKVKSKNSV IKLLSTAASG YSRYISIKKG APLVTQVRYD PVVKRHVLFK EAKKRKVAER  60
   61 KPLDFLRTAK 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.554 d.58.5 GlnB-like
View Download 0.630 a.52.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
View Download 0.637 a.58.1 Chemotaxis receptor methyltransferase CheR, N-terminal domain
View Download 0.515 d.58.23 Probable ACP-binding domain of malonyl-CoA ACP transacylase
View Download 0.505 d.52.5 Probable GTPase Der, C-terminal domain
View Download 0.464 d.58.17 Metal-binding domain
View Download 0.423 d.58.49 YajQ-like
View Download 0.423 d.58.7 RNA-binding domain, RBD
View Download 0.414 a.163.1 Crustacean CHH/MIH/GIH neurohormone
View Download 0.394 d.58.11 EF-G/eEF-2 domains III and V
View Download 0.389 a.4.1 Homeodomain-like
View Download 0.380 d.58.38 Urease metallochaperone UreE, C-terminal domain
View Download 0.371 a.4.1 Homeodomain-like
View Download 0.368 b.40.6 MOP-like
View Download 0.362 a.28.1 ACP-like
View Download 0.358 a.4.6 C-terminal effector domain of the bipartite response regulators
View Download 0.349 d.58.49 YajQ-like
View Download 0.321 d.58.18 Regulatory domain in the aminoacid metabolism
View Download 0.320 d.37.1 CBS-domain
View Download 0.319 a.4.1 Homeodomain-like
View Download 0.315 d.50.3 PI-Pfui intein middle domain
View Download 0.313 a.51.1 Cytochrome c oxidase subunit h
View Download 0.311 d.58.17 Metal-binding domain
View Download 0.307 a.76.1 Iron-dependent represor protein, dimerization domain
View Download 0.305 a.4.6 C-terminal effector domain of the bipartite response regulators
View Download 0.300 d.50.2 Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain
View Download 0.296 a.4.5 "Winged helix" DNA-binding domain
View Download 0.269 d.58.5 GlnB-like
View Download 0.258 a.57.1 Protein HNS-dependent expression A; HdeA
View Download 0.255 a.4.1 Homeodomain-like
View Download 0.249 i.1.1 Ribosome and ribosomal fragments
View Download 0.247 d.58.23 Probable ACP-binding domain of malonyl-CoA ACP transacylase
View Download 0.247 d.45.1 ClpS-like
View Download 0.241 d.186.1 Head-to-tail joining protein W, gpW
View Download 0.238 d.58.18 Regulatory domain in the aminoacid metabolism
View Download 0.234 d.9.2 Description not found.
View Download 0.207 d.58.43 Mechanosensitive channel protein MscS (YggB), C-terminal domain
View Download 0.206 a.20.1 PGBD-like


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle