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View Structure Prediction Details

Protein: YLR462W
Organism: Saccharomyces cerevisiae
Length: 202 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YLR462W.

Description E-value Query
Range
Subject
Range
YRF1-8, YRF1-5, ... - One of several telomeric Y' element-encoded DNA helicases, known as Y'-Help1 (Y'-HELicase Protein 1)...
YRF18_YEAST, YRF... - Y' element ATP-dependent helicase protein 1 copy 8 OS=Saccharomyces cerevisiae (strain ATCC 204508 /...
418.0 [0..1] [201..1]

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Predicted Domain #1
Region A:
Residues: [1-109]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKVSDRRKFE KANFDEFESA LNNKNDLVHC PSITLFESIP TEVRSFYEDE KSGLIKVVKF  60
   61 RTGAMDRKRS FEKVVISVMV GKNVKKFLTF VEDEPDFQGG PIPSKYLVP

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.213 N/A N/A d.52.7 Ribosome-binding factor A, RbfA

Predicted Domain #2
Region A:
Residues: [110-202]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KKINLMVYTL FQVHTLKFNR KDYDTLSLFY LNRGYYNELS FRVLERCHEI ASARPNDSST  60
   61 MRTFTDFVSG APIVRSLQKS TIRKYGYNLA AYT

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.746 N/A N/A d.43.1 Elongation factor Ts (EF-Ts), dimerisation domain
View Download 0.727 N/A N/A d.43.1 Elongation factor Ts (EF-Ts), dimerisation domain
View Download 0.634 N/A N/A a.23.4 Mitochondrial import receptor subunit Tom20
View Download 0.556 N/A N/A d.27.1 Ribosomal protein S16
View Download 0.530 N/A N/A a.23.4 Mitochondrial import receptor subunit Tom20


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle