YRC Public Data Repository - Protein Structure Prediction

Protein:	RIF2
Organism:	Saccharomyces cerevisiae
Length:	395 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RIF2.

Description	E-value	Query Range	Subject Range
RIF2 - Protein that binds to the Rap1p C-terminus and acts synergistically with Rif1p to help control telom... RIF2_YEAST - Protein RIF2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RIF2 PE=1 SV=1	0.0	[1..395]	[1..395]

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Predicted Domain #1

Region A:
Residues: [1-395]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEHVDSDFAP IRRSKKVVDS DKIVKAISDD LEQKNFTVLR KLNLVPIKKS VSSPKVCKPS  60
   61 PVKERVDHVF YQKFKSMALQ ELGTNYLSIS YVPSLSKFLS KNLRSMKNCI VFFDKVEHIH 120
  121 QYAGIDRAVS ETLSLVDINV VIIEMNDYLM KEGIQSSKSK ECIESMGQAS YSGQLDFEAS 180
  181 EKPSNHTSDL MMMVMRKINN DESIDHIVYF KFEQLDKLST STIIEPSKLT EFINVLSVLE 240
  241 KSNNIAFKVL IYSNNVSISS LLSTSLKKKL NTKYTVFEMP ILTCAQEQEY LKKMIKFTFD 300
  301 SGSKLLQSYN SLVTCQLNNK ESNLAIFFEF LKVFPHPFTY LFNAYTEIIV QSRTFDELLD 360
  361 KIRNRLTIKN YPHSAYNFKK NQRLPLKLTR KVHDR

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [184-395]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SNHTSDLMMM VMRKINNDES IDHIVYFKFE QLDKLSTSTI IEPSKLTEFI NVLSVLEKSN  60
   61 NIAFKVLIYS NNVSISSLLS TSLKKKLNTK YTVFEMPILT CAQEQEYLKK MIKFTFDSGS 120
  121 KLLQSYNSLV TCQLNNKESN LAIFFEFLKV FPHPFTYLFN AYTEIIVQSR TFDELLDKIR 180
  181 NRLTIKNYPH SAYNFKKNQR LPLKLTRKVH DR