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View Structure Prediction Details

Protein: TSR2
Organism: Saccharomyces cerevisiae
Length: 249 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TSR2.

Description E-value Query
Range
Subject
Range
gi|19483873 - gi|19483873|gb|AAH25008.1| Tsr2 protein [Mus musculus]
2.0E-52 [70..245] [5..190]
SPBC409.15 - rRNA processing protein Tsr2
TSR2_SCHPO - Pre-rRNA-processing protein tsr2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tsr2 PE=3...
1.0E-48 [66..246] [1..179]
gi|21593848, gi|... - gi|98960945|gb|ABF58956.1| At5g27990 [Arabidopsis thaliana], gi|21593848|gb|AAM65815.1| unknown [Ara...
4.0E-43 [71..247] [10..180]
gi|7507776 - gi|7507776|pir||T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans
2.0E-42 [73..247] [10..217]

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Predicted Domain #1
Region A:
Residues: [1-249]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKNFEIDIDE YQNDSNSLYL LQQEERWSPK KSAKNFYSDN PYGTMSTQYI DETAFVQAEQ  60
   61 GKTNLMFSDE KQQARFELGV SMVIYKWDAL DVAVENSWGG PDSAEKRDWI TGIVVDLFKN 120
  121 EKVVDAALIE ETLLYAMIDE FETNVEDDSA LPIAVEVINI YNDCFNLNYN KVEKLYLEWQ 180
  181 EKQRTKKSKR VVHIEGDDDE DDEDVEDYDD EDEDEEMDEV VPDLVSSKPE PIVDEDGFEL 240
  241 VQPKGRRKH

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle