| Protein: | ATG23 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 453 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ATG23.
| Description | E-value | Query Range |
Subject Range |
|
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1.0E-94 | [55..438] | [144..508] |
|
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3.0E-90 | [55..450] | [152..527] |
|
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8.0E-82 | [55..435] | [88..454] |
|
Region A: Residues: [1-122] |
1 11 21 31 41 51
| | | | | |
1 MELNQVLEKK EQILQYLGTL VGLHEKALSD VNSASQVTSI RKDITICLND LCRINDLLVS 60
61 HDGLLKREIG SLLRDKQELL ELNEREQLLW KERKSWHIKQ ETDAAPADYV IDKDAIITIS 120
121 SH
|
| Detection Method: |  |
| Confidence: | 22.09691 |
| Match: | 1i84S_ |
| Description: | Heavy meromyosin subfragment |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [123-261] |
1 11 21 31 41 51
| | | | | |
1 HRTSLNKYIE SVGAENTILS NTDDSDAMIE EVQNAESSAD QMIRNYKLLQ LSHKQAKSEI 60
61 IRLETLLRDF KKDNKFIEEE LKRQSGRIRS EMGNIDFHLS KIEESKHQLM KRIGFESPLT 120
121 QEKSLSEKIF NLRLSSADE
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.939 | 0.760 | autophagy | a.47.2 | t-snare proteins |
| View | Download | 0.732 | 0.006 | protein targeting to vacuole | a.7.1 | Spectrin repeat |
| View | Download | 0.880 | 0.004 | protein targeting to vacuole | a.2.7 | tRNA-binding arm |
| View | Download | 0.779 | 0.003 | protein targeting to vacuole | a.47.1 | STAT |
| View | Download | 0.747 | 0.002 | protein targeting to vacuole | a.7.5 | Tubulin chaperone cofactor A |
| View | Download | 0.718 | N/A | N/A | a.7.4 | Smac/diablo |
| View | Download | 0.711 | N/A | N/A | a.29.5 | alpha-ketoacid dehydrogenase kinase, N-terminal domain |
| View | Download | 0.666 | N/A | N/A | a.24.9 | alpha-catenin/vinculin |
| View | Download | 0.640 | N/A | N/A | a.47.2 | t-snare proteins |
| View | Download | 0.626 | N/A | N/A | f.17.1 | F1F0 ATP synthase subunit C |
| View | Download | 0.622 | N/A | N/A | a.24.16 | Nucleotidyltransferase substrate binding subunit/domain |
| View | Download | 0.604 | N/A | N/A | a.2.6 | Effector domain of the protein kinase pkn/prk1 |
| View | Download | 0.601 | N/A | N/A | a.26.1 | 4-helical cytokines |
| View | Download | 0.562 | N/A | N/A | a.7.1 | Spectrin repeat |
| View | Download | 0.541 | N/A | N/A | a.2.5 | Prefoldin |
| View | Download | 0.495 | N/A | N/A | a.24.14 | FAT domain of focal adhesion kinase |
| View | Download | 0.458 | N/A | N/A | a.7.3 | Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain |
| View | Download | 0.455 | N/A | N/A | a.74.1 | Cyclin-like |
| View | Download | 0.450 | N/A | N/A | a.24.9 | alpha-catenin/vinculin |
| View | Download | 0.439 | N/A | N/A | a.25.1 | Ferritin-like |
| View | Download | 0.438 | N/A | N/A | a.2.8 | Eukaryotic DNA topoisomerase I, dispensable insert domain |
| View | Download | 0.432 | N/A | N/A | a.5.4 | Elongation factor TFIIS domain 2 |
| View | Download | 0.428 | N/A | N/A | a.7.1 | Spectrin repeat |
| View | Download | 0.419 | N/A | N/A | a.7.7 | BAG domain |
| View | Download | 0.393 | N/A | N/A | a.37.1 | A DNA-binding domain in eukaryotic transcription factors |
| View | Download | 0.376 | N/A | N/A | a.24.9 | alpha-catenin/vinculin |
| View | Download | 0.346 | N/A | N/A | a.29.3 | Acyl-CoA dehydrogenase C-terminal domain-like |
| View | Download | 0.342 | N/A | N/A | a.72.1 | Functional domain of the splicing factor Prp18 |
| View | Download | 0.324 | N/A | N/A | a.27.1 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |
| View | Download | 0.309 | N/A | N/A | a.7.1 | Spectrin repeat |
| View | Download | 0.306 | N/A | N/A | f.15.1 | Small-conductance potassium channel |
| View | Download | 0.292 | N/A | N/A | f.36.1 | Neurotransmitter-gated ion-channel pransmembrane pore |
| View | Download | 0.291 | N/A | N/A | f.21.2 | Fumarate reductase respiratory complex transmembrane subunits |
| View | Download | 0.289 | N/A | N/A | a.26.1 | 4-helical cytokines |
| View | Download | 0.283 | N/A | N/A | a.29.3 | Acyl-CoA dehydrogenase C-terminal domain-like |
| View | Download | 0.281 | N/A | N/A | f.25.1 | Cytochrome c oxidase subunit III-like |
| View | Download | 0.280 | N/A | N/A | d.122.1 | ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase |
| View | Download | 0.279 | N/A | N/A | a.118.1 | ARM repeat |
| View | Download | 0.279 | N/A | N/A | a.24.16 | Nucleotidyltransferase substrate binding subunit/domain |
| View | Download | 0.277 | N/A | N/A | a.24.3 | Cytochromes |
| View | Download | 0.271 | N/A | N/A | a.7.2 | Enzyme IIa from lactose specific PTS, IIa-lac |
| View | Download | 0.269 | N/A | N/A | a.62.1 | Hepatitis B viral capsid (hbcag) |
| View | Download | 0.256 | N/A | N/A | a.7.8 | GAT domain |
| View | Download | 0.249 | N/A | N/A | a.1.1 | Globin-like |
| View | Download | 0.249 | N/A | N/A | a.26.1 | 4-helical cytokines |
| View | Download | 0.248 | N/A | N/A | a.7.5 | Tubulin chaperone cofactor A |
| View | Download | 0.246 | N/A | N/A | a.26.1 | 4-helical cytokines |
| View | Download | 0.246 | N/A | N/A | a.24.4 | Hemerythrin |
| View | Download | 0.242 | N/A | N/A | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.240 | N/A | N/A | a.1.1 | Globin-like |
| View | Download | 0.239 | N/A | N/A | a.22.1 | Histone-fold |
| View | Download | 0.238 | N/A | N/A | a.63.1 | Apolipophorin-III |
| View | Download | 0.236 | N/A | N/A | e.20.1 | Heat shock protein 70kD (HSP70), C-terminal substrate-binding fragment |
| View | Download | 0.234 | N/A | N/A | a.26.1 | 4-helical cytokines |
| View | Download | 0.229 | N/A | N/A | a.2.11 | Fe,Mn superoxide dismutase (SOD), N-terminal domain |
| View | Download | 0.224 | N/A | N/A | a.168.1 | GEF domain of SopE toxin |
| View | Download | 0.224 | N/A | N/A | a.23.1 | HSC20 (HSCB), C-terminal oligomerisation domain |
| View | Download | 0.222 | N/A | N/A | f.17.2 | Cytochrome c oxidase subunit II-like, transmembrane region |
| View | Download | 0.216 | N/A | N/A | a.132.1 | Heme oxygenase |
| View | Download | 0.215 | N/A | N/A | c.43.1 | CoA-dependent acyltransferases |
| View | Download | 0.212 | N/A | N/A | d.108.1 | Acyl-CoA N-acyltransferases (Nat) |
| View | Download | 0.211 | N/A | N/A | a.24.1 | Apolipoprotein |
| View | Download | 0.211 | N/A | N/A | a.1.1 | Globin-like |
| View | Download | 0.211 | N/A | N/A | a.19.1 | Fertilization protein |
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Region A: Residues: [262-453] |
1 11 21 31 41 51
| | | | | |
1 DYNERQTINM KNFVHMKDLI ELKIEDLQEQ LMRNKNESST VLTQRELWLD CQKKVGDLES 60
61 KLITKLRSSS NSKIPPNEMS EMINSTIQYL NNLLDSSDEK LTTTLISNER DVLSKACEEL 120
121 HSESTTAQDG SSALPSKPID IHKSHKGSNA SSNLKQPSTP SFLVASKSPP KIGISESVVN 180
181 ANKNDAISKK VE
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| Detection Method: | |
| Confidence: | 12.522879 |
| Match: | 1gk4A_ |
| Description: | Vimentin coil |
Matching Structure (courtesy of the PDB): |
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