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View Structure Prediction Details

Protein: YLR408C
Organism: Saccharomyces cerevisiae
Length: 122 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YLR408C.

Description E-value Query
Range
Subject
Range
BL1S1_CANGA - Biogenesis of lysosome-related organelles complex 1 subunit BLS1 OS=Candida glabrata (strain ATCC 20...
gi|49529089 - gi|49529089|emb|CAG62753.1| unnamed protein product [Candida glabrata]
97.0 [0..20] [122..4]
BL1S1_KLULA - Biogenesis of lysosome-related organelles complex 1 subunit BLS1 OS=Kluyveromyces lactis (strain ATC...
gi|49640792 - gi|49640792|emb|CAH02053.1| KLLA0B02871p [Kluyveromyces lactis]
80.0 [0..26] [120..8]
gi|45190685, gi|... - gi|45190685|ref|NP_984939.1| AER079Cp [Ashbya gossypii ATCC 10895], gi|44983664|gb|AAS52763.1| AER07...
BL1S1_ASHGO - Biogenesis of lysosome-related organelles complex 1 subunit BLS1 OS=Ashbya gossypii (strain ATCC 108...
70.0 [0..22] [104..2]

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Predicted Domain #1
Region A:
Residues: [1-122]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFLTFSMCVN WIIVKMPNRS EELDRLLDKI INSPHRTEAS KTLQEIENNQ SYILNVQLKK  60
   61 LLRLHDDSFK NKCVSPINYM LEKYTPYMGH TEALQKEAEL VDRDLRILEM TYQLIEKNRN 120
  121 SK

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.501 a.24.22 Description not found.
View Download 0.458 a.24.10 Histidine-containing phosphotransfer domain, HPT domain
View Download 0.458 a.24.10 Histidine-containing phosphotransfer domain, HPT domain
View Download 0.449 f.56.1 Description not found.
View Download 0.420 a.78.1 Fatty acid responsive transcription factor FadR, C-terminal domain
View Download 0.401 f.56.1 Description not found.
View Download 0.395 a.24.17 Group V grass pollen allergen
View Download 0.359 d.195.1 YopH tyrosine phosphatase N-terminal domain
View Download 0.332 d.110.4 SNARE-like


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle