| Protein: | BDF1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 686 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for BDF1.
| Description | E-value | Query Range |
Subject Range |
|
|
497.0 | [0..1] | [671..1] |
|
|
383.0 | [0..6] | [673..93] |
|
|
358.0 | [0..130] | [669..8] |
|
|
337.0 | [0..127] | [668..4] |
|
|
332.0 | [0..99] | [664..1085] |
|
Region A: Residues: [1-151] |
1 11 21 31 41 51
| | | | | |
1 MTDITPVQND VDVNGNNVND DVSSNLKRPI DQGDPSNGLA EEENPANNQL HLKKARLDGD 60
61 ALTSSPAGLA ENGIEGATLA ANGENGYNAT GSGAEDEQQG LKKEEGGQGT KQEDLDENSK 120
121 QELPMEVPKE PAPAPPPEPD MNNLPQNPIP K
|
| Detection Method: |  |
| Confidence: | 7.25 |
| Match: | |
| Description: | No description for 1ldvA was found. |
|
Region A: Residues: [152-269] |
1 11 21 31 41 51
| | | | | |
1 HQQKHALLAI KAVKRLKDAR PFLQPVDPVK LDIPFYFNYI KRPMDLSTIE RKLNVGAYEV 60
61 PEQITEDFNL MVNNSIKFNG PNAGISQMAR NIQASFEKHM LNMPAKDAPP VIAKGRRS
|
| Detection Method: | |
| Confidence: | 31.259637 |
| Match: | PF00439 |
| Description: | Bromodomain |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.962 | N/A | N/A | a.29.2 | Bromodomain |
|
Region A: Residues: [270-472] |
1 11 21 31 41 51
| | | | | |
1 SAQEDAPIVI RRAQTHNGRP KRTIHPPKSK DIYPYESKKP KSKRLQQAMK FCQSVLKELM 60
61 AKKHASYNYP FLEPVDPVSM NLPTYFDYVK EPMDLGTIAK KLNDWQYQTM EDFERDVRLV 120
121 FKNCYTFNPD GTIVNMMGHR LEEVFNSKWA DRPNLDDYDS DEDSRTQGDY DDYESEYSES 180
181 DIDETIITNP AIQYLEEQLA RMK
|
| Detection Method: | |
| Confidence: | 176.38764 |
| Match: | 1e6iA |
| Description: | GCN5 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [473-527] |
1 11 21 31 41 51
| | | | | |
1 VELQQLKKQE LEKIRKERRL ARGSKKRGKR SKGRSGSKNA SSKGRRDKKN KLKTV
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [528-686] |
1 11 21 31 41 51
| | | | | |
1 VTYDMKRIIT ERINDLPTSK LERAIDIIKK SMPNISEDDE VELDLDTLDN HTILTLYNTF 60
61 FRQYESSSGA SNGLDGTSGV TRDASSLSPT SAGSRKRRSK ALSQEEQSRQ IEKIKNKLAI 120
121 LDSASPLSQN GSPGQIQSAA HNGFSSSSDD DVSSESEEE
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
