| Protein: | SKI2 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 1287 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SKI2.
| Description | E-value | Query Range |
Subject Range |
|
|
1308.0 | [0..1] | [1287..1] |
|
|
1046.0 | [0..59] | [1286..65] |
|
|
1027.0 | [0..59] | [1286..65] |
|
Region A: Residues: [1-170] |
1 11 21 31 41 51
| | | | | |
1 MSEGFSSSSI QELYQSLKEI TNNADVELFE DRITKLDFES TDEPKHANDI IKDRFLRPSN 60
61 ALPWSLLDMV QDVPHTSSPE DCSGKLDYKE LLKVPDPINR TSYQFKRTGL EGKISGYKEE 120
121 VDLKEVANAN ASNSLSITRS INHNQNSVRG STAQLPFTPG GIPMKSVKTD
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [171-274] |
1 11 21 31 41 51
| | | | | |
1 SEQNGSSTMA NATKLLHKDG QGLFDIPEGM NRGIKPMDSP AENEDQNGQF KELKQLNEID 60
61 NELDIRIEAN EAKLKEEEKS AKSISEEIME EATEETTADN ADDA
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [275-667] |
1 11 21 31 41 51
| | | | | |
1 EIDELLPIGI DFGRTKPVSK SVPVKKEWAH VVDLNHKIEN FDELIPNPAR SWPFELDTFQ 60
61 KEAVYHLEQG DSVFVAAHTS AGKTVVAEYA IAMAHRNMTK TIYTSPIKAL SNQKFRDFKE 120
121 TFDDVNIGLI TGDVQINPDA NCLIMTTEIL RSMLYRGADL IRDVEFVIFD EVHYVNDQDR 180
181 GVVWEEVIIM LPQHVKFILL SATVPNTYEF ANWIGRTKQK NIYVISTPKR PVPLEINIWA 240
241 KKELIPVINQ NSEFLEANFR KHKEILNGES AKGAPSKTDN GRGGSTARGG RGGSNTRDGR 300
301 GGRGNSTRGG ANRGGSRGAG AIGSNKRKFF TQDGPSKKTW PEIVNYLRKR ELLPMVVFVF 360
361 SKKRCEEYAD WLEGINFCNN KEKSQIHMFI EKS
|
| Detection Method: | |
| Confidence: | 96.522879 |
| Match: | 1fuuA |
| Description: | Initiation factor 4a |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [668-891] |
1 11 21 31 41 51
| | | | | |
1 ITRLKKEDRD LPQILKTRSL LERGIAVHHG GLLPIVKELI EILFSKGFIK VLFATETFAM 60
61 GLNLPTRTVI FSSIRKHDGN GLRELTPGEF TQMAGRAGRR GLDSTGTVIV MAYNSPLSIA 120
121 TFKEVTMGVP TRLQSQFRLT YNMILNLLRI EALRVEEMIK YSFSENAKET LQPEHEKQIK 180
181 VLQEELQTIE YKSCEICDND IEKFLELMLA YKEATVNLMQ EMVK
|
| Detection Method: | |
| Confidence: | 7.0 |
| Match: | 1c4oA |
| Description: | Nucleotide excision repair enzyme UvrB |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [892-964] |
1 11 21 31 41 51
| | | | | |
1 SPSILHILKE GRLVAFRDPN DCLKLGFVFK VSLKDAVCVI MTFTKPYKLP NGEPNHLIYF 60
61 PKADGYRRRN FPK
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.845 | d.58.7 | RNA-binding domain, RBD |
|
Region A: Residues: [965-1287] |
1 11 21 31 41 51
| | | | | |
1 FQKTDFYMEE VPVTAIEVIT KRKFAAPLGK VIKKDVAALN EFNAETNNIL DGKTLKEAIN 60
61 IEKQGLKIHQ ILLDRTNIRD EIFKLKSIKC PNLSQHIVPK FKAHVIKKKI EELYHLMSDQ 120
121 NLSLLPDYEK RLAVLKDTEF IDQNHNVLLK GRVACEINSG YELVLTELIL DNFLGSFEPE 180
181 EIVALLSVFV YEGKTREEEP PIVTPRLAKG KQRIEEIYKK MLCVFNTHQI PLTQDEAEFL 240
241 DRKRFAMMNV VYEWARGLSF KEIMEMSPEA EGTVVRVITW LDEICREVKT ASIIIGNSTL 300
301 HMKMSRAQEL IKRDIVFAAS LYL
|
| Detection Method: | |
| Confidence: | 7.51 |
| Match: | |
| Description: | No description for 1n1bA was found. |
