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View Structure Prediction Details

Protein: ROM2
Organism: Saccharomyces cerevisiae
Length: 1356 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ROM2.

Description E-value Query
Range
Subject
Range
gi|50303861, gi|... - gi|50303861|ref|XP_451877.1| unnamed protein product [Kluyveromyces lactis], gi|49641009|emb|CAH0227...
gi|16611806, gi|... - gi|49641009|emb|CAH02270.1| KLLA0B07799p [Kluyveromyces lactis], gi|16611806|gb|AAL27369.1|AF421953_...
913.0 [0..1] [1356..1]
gi|1314785 - gi|1314785|gb|AAA99813.1| protein kinase C suppressor Skc1p
882.0 [0..188] [1354..21]
gi|45199103, gi|... - gi|45199103|ref|NP_986132.1| AFR585Wp [Ashbya gossypii ATCC 10895], gi|44985178|gb|AAS53956.1| AFR58...
gi|44985178 - gi|44985178|gb|AAS53956.1| AFR585Wp [Ashbya gossypii ATCC 10895]
834.0 [0..240] [1355..184]
gi|49525880 - gi|49525880|emb|CAG59499.1| unnamed protein product [Candida glabrata]
gi|50288287, gi|... - gi|50288287|ref|XP_446572.1| unnamed protein product [Candida glabrata], gi|49525880|emb|CAG59499.1|...
830.0 [0..86] [1356..55]
RGF1_SCHPO - Rho1 guanine nucleotide exchange factor 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=...
rgf1 - RhoGEF for Rho1, Rgf1
755.0 [0..81] [1345..30]
gi|169778969 - gi|169778969|ref|XP_001823949.1| hypothetical protein [Aspergillus oryzae RIB40]
gi|83772688 - gi|83772688|dbj|BAE62816.1| unnamed protein product [Aspergillus oryzae]
574.0 [0..146] [1354..34]
gi|58270880, gi|... - gi|58270880|ref|XP_572596.1| Rho guanyl-nucleotide exchange factor [Cryptococcus neoformans var. neo...
562.0 [0..219] [1329..8]

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Predicted Domain #1
Region A:
Residues: [1-137]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSETNVDSLG DRNDIYSQIF GVERRPDSFA TFDSDSHGDI SSQLLPNRIE NIQNLNVLLS  60
   61 EDIANDIIIA KQRRRSGVEA AIDDSDIPNN EMKGKSSNYI LSQQTNIKEV PDTQSLSSAD 120
  121 NTPVSSPKKA RDATSSH

[Run NCBI BLAST on this sequence.]

Detection Method: ab initio
Confidence: 12.41
Match:
Description: No description for 1ldvA was found.

Predicted Domain #2
Region A:
Residues: [138-531]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PIVHAKSMSH IYSTSNSASR QAKHYNDHPL PPMSPRNEVY QKNKSTTAFV PKRKPSLPQL  60
   61 ALAGLKKQSS FSTGSASTTP TQARKSPLQG FGFFSRPSSK DLHEQHQHHQ HIQHNNINNH 120
  121 NNNNTNNNGA HYQVGSSNSN YPQHSHSISS RSMSLNSSTL KNIASSFQSK TSNSRKATQK 180
  181 YDITSNPFSD PHHHHHHHHS SNSHSSLNNV HGSGNSSSVM GSSSNIGLGL KTRVSSTSLA 240
  241 LKRYTSVSGT SLSSPRRSSM TPLSASRPVM SASSKKPQVY PALLSRVATK FKSSIQLGEH 300
  301 KKDGLVYRDA FTGQQAVDVI CAIIRTSDRN LALLFGRSLD AQKLFHDVVY EHRLRDSPHE 360
  361 VYEFTDNSRF TGTGSTNAHD PLMLLPNSSS FNSG

[Run NCBI BLAST on this sequence.]

Detection Method: ab initio
Confidence: 12.45
Match:
Description: No description for 1m2vB was found.

Predicted Domain #3
Region A:
Residues: [532-641]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NHSYPNSGMV PSSSTSSLNS DQATLTGSRL HMSSSLSQQK NPAAIHNVNG VFTLLAECYS  60
   61 PTCTRDALCY SISCPRRLEQ QARLNLKPNG GLKRNISMAL DDDDEEKPSW 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [642-849]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TSSVSKEDWE NLPKKEIKRQ EAIYEVYITE KNFVKSLEIT RDTFMKTLAE TNIISADIRK  60
   61 NFIKHVFAHI NDIYSVNRRF LKALTDRQRS SPVVRGIGDI VLRFIPFFEP FVSYVASRPY 120
  121 AKYLIETQRS VNPYFARFDD DMMSSSLRHG IDSFLSQGVS RPGRYMLLVK EIMKSTDPEK 180
  181 DKSDYEDLSK AMDALRDFMK RIDQASGA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 197.9897
Match: 1ki1B
Description: GEF of intersectin
Matching Structure (courtesy of the PDB):

Predicted Domain #5
Region A:
Residues: [850-1032]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AQDRHDVKLL KQKILFKNEY VNLGLNDERR KIKHEGILSR KELSKSDGTV VGDIQFYLLD  60
   61 NMLLFLKAKA VNKWHQHKVF QRPIPLPLLF ACPGEDMPAL RKYIGDHPDC SGTVIQPEYN 120
  121 TSNPKNAITF LYYGAKQRYQ VTLYAAQYAG LQTLLEKIKQ GQAAIISKTE MFNVTKMSDR 180
  181 FFD

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 197.9897
Match: 1ki1B
Description: GEF of intersectin
Matching Structure (courtesy of the PDB):

Predicted Domain #6
Region A:
Residues: [1033-1356]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YTNKINSVTS CDGGRKLLIA TNSGLYMSNI KRQQNKDHRH KSSAFFSTPI QLVQRNNITQ  60
   61 IAVLEEFKSI ILLIDKKLYS CPLSLIEAEG NGTSFFKKHH KELINHVSFF AEGDCNGKRL 120
  121 IVTAHSSSHS IKYFEHEHPL LAEKNGSGSG NKKSLKKKIT EVIFDSEPVS ISFLKANLCI 180
  181 GCKKGFQIVS ISQNAHESLL DPADTSLEFA LRDTLKPMAI YRVGNMFLLC YTEFAFFVNN 240
  241 QGWRKKESHI IHWEGEPQKF AIWYPYILAF DSNFIEIRKI ETGELIRCVL ADKIRLLQTS 300
  301 TQEILYCYED YRGYDTVASL DFWG

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 104.552842
Match: PF00780
Description: CNH domain

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle